Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1139
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    27   0.18 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.42 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   1.7  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   3.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 425 LFSPKRPL*LLSIWVLLQVCRSPYLFYYLLKASW 324
           LFS    L +   ++L++VC + YL + LL+ +W
Sbjct: 275 LFSCLLHLVVTPYYLLIEVCNAGYLPFILLQVAW 308


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 266 DSSFLSADESDDDSVGETVSKKPSTNNK 349
           D S  S   S+DDSV +  ++KP T+ K
Sbjct: 243 DLSVSSRKRSNDDSVSQPPNRKPRTDFK 270


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 662 FIFLCTILNFNHFRCLFNI*IRL 594
           F +L  ++ F HF CLF I I +
Sbjct: 20  FKYLKVLVTFAHFICLFPITINI 42


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 626 FRCLFNI*IRLLTVLLLNGSNTLRFFTSEVGCVNNLGVCV 507
           F CL+   I  LT+  L       F T ++G   N G+ +
Sbjct: 290 FLCLYLFLIITLTIYGLLSQLQAGFSTKDIGLTINAGLAI 329


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +2

Query: 470  RSNLTHPTKESLIHKLLNYLRSPPLK*RNVMYYCHLITV 586
            R+N+T+  + S +H    YL+  P+    V ++  ++ +
Sbjct: 1302 RTNITYIEETSEVHISKEYLQLEPIGLVFVFFFALILVI 1340


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +2

Query: 470  RSNLTHPTKESLIHKLLNYLRSPPLK*RNVMYYCHLITV 586
            R+N+T+  + S +H    YL+  P+    V ++  ++ +
Sbjct: 1302 RTNITYIEETSEVHISKEYLQLEPIGLVFVFFFALILVI 1340


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,566
Number of Sequences: 336
Number of extensions: 2634
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)