Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1139
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   2.4  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    27   2.4  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   3.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.2  
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   7.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   9.8  

>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 212 NVSFIS*FDASSKRADTPDSSFLSADESDDDSVGETVSKKPSTNNKINR 358
           N +F + F   +    TP+     + + DDDSV E  S    +   I+R
Sbjct: 378 NPAFSTNFGLEASNTSTPEKKKFDSQKPDDDSVNEISSDLGLSTTGIDR 426


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +2

Query: 254 ADTP--DSSFLSADESDDDS-VGETVSKKPSTNNKIN 355
           ADTP  +S+ +S +ESDDDS + +   +  STN + N
Sbjct: 42  ADTPLDESAIVSEEESDDDSLLSDLPEEIDSTNAQSN 78


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 556 RNVLLPFNNSTVKSLIQILNKHLK 627
           R+ L  FN S V  +IQ+LN+ +K
Sbjct: 619 RSALFAFNKSNVHEIIQLLNEPVK 642


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 180  TSNSIKFAPMPMSALLANLMP 242
            T NS++FAP+PM+  + + +P
Sbjct: 2407 TDNSLRFAPVPMTKPILSSLP 2427


>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 478 SNTSYQREFDTQTPKLFTQPTSEVKKRNVLLPFNNSTV 591
           SN  YQ   D QTP  +    S     N+  PF +S+V
Sbjct: 5   SNDLYQTRLDVQTPNRWFLYISLELFNNMYSPFRSSSV 42


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 233 FDASSKRADTPDSSFLSADESDDDSVGETV 322
           FD      D+  SS +   ESDD+S G+ +
Sbjct: 528 FDEEDLTGDSHGSSNMKISESDDESNGDMI 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,642
Number of Sequences: 5004
Number of extensions: 46337
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)