Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1139
         (665 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034320-1|AAH34320.1|  255|Homo sapiens fragile X mental retard...    30   8.5  
AY211917-1|AAO65170.1|  255|Homo sapiens sarcoma antigen NY-SAR-...    30   8.5  
AK098602-1|BAC05349.1|  255|Homo sapiens protein ( Homo sapiens ...    30   8.5  

>BC034320-1|AAH34320.1|  255|Homo sapiens fragile X mental
           retardation 1 neighbor protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -1

Query: 398 LLSIWVLLQVCRSPYLFYYLLKASWRPFRLPNHH 297
           +LSIW+LL VC   YL YYL   S   F L N H
Sbjct: 73  MLSIWILLFVCY--YLSYYLCSGS-SYFVLANGH 103


>AY211917-1|AAO65170.1|  255|Homo sapiens sarcoma antigen NY-SAR-35
           protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -1

Query: 398 LLSIWVLLQVCRSPYLFYYLLKASWRPFRLPNHH 297
           +LSIW+LL VC   YL YYL   S   F L N H
Sbjct: 73  MLSIWILLFVCY--YLSYYLCSGS-SYFVLANGH 103


>AK098602-1|BAC05349.1|  255|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25736 fis, clone TST05681. ).
          Length = 255

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -1

Query: 398 LLSIWVLLQVCRSPYLFYYLLKASWRPFRLPNHH 297
           +LSIW+LL VC   YL YYL   S   F L N H
Sbjct: 73  MLSIWILLFVCY--YLSYYLCSGS-SYFVLANGH 103


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,146,407
Number of Sequences: 237096
Number of extensions: 1391969
Number of successful extensions: 2544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2544
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)