Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1139
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024830-7|AAV34782.1|  580|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical ...    28   6.8  

>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
           protein H06O01.2 protein.
          Length = 1461

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 236 DASSKRADTPDSSFLSADESDDDSVGETVSK--KPSTNNKINRD 361
           D   K AD+P+SS   +D+SDD S   + S+  +P+   K N +
Sbjct: 39  DEKEKAADSPESSSDQSDDSDDASENSSSSEPDEPAPKKKNNNN 82


>AC024830-7|AAV34782.1|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8b protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 260 TPDSSFLSADESDDDSVGETVSKKPSTNNKINRD 361
           TPD S  + DE DDD   +T S+ P+   K   D
Sbjct: 428 TPDGSDSADDEDDDDIFYDTFSEIPAAAEKSIND 461


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 260 TPDSSFLSADESDDDSVGETVSKKPSTNNKINRD 361
           TPD S  + DE DDD   +T S+ P+   K   D
Sbjct: 451 TPDGSDSADDEDDDDIFYDTFSEIPAAAEKSIND 484


>AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3b protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 620 CLFNI*IRLLTVLLLNGSNTLRFFTSEVGCVN---NLGVC 510
           C  NI +  L  +L  G N LR   + +GC++   NLG+C
Sbjct: 167 CPSNISVLTLLRVLYLGGNRLREIPASIGCLDELENLGLC 206


>AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3a protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 620 CLFNI*IRLLTVLLLNGSNTLRFFTSEVGCVN---NLGVC 510
           C  NI +  L  +L  G N LR   + +GC++   NLG+C
Sbjct: 167 CPSNISVLTLLRVLYLGGNRLREIPASIGCLDELENLGLC 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,103,373
Number of Sequences: 27780
Number of extensions: 248979
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)