Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1139
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa...    29   3.7  
At2g36710.1 68415.m04504 pectinesterase family protein contains ...    28   4.9  
At2g30350.2 68415.m03694 endo/excinuclease amino terminal domain...    28   4.9  
At2g30350.1 68415.m03693 endo/excinuclease amino terminal domain...    28   4.9  
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto...    28   6.4  
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto...    28   6.4  

>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1280

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 263 PDSSFLSADESDDDSVGETVSKKPSTNNKINRDF-YTPV 376
           P+ S   A E    S  E +  KPST+N+ + DF Y PV
Sbjct: 686 PERSSHVAAECSAGSFSEEIDDKPSTSNQSDPDFGYRPV 724


>At2g36710.1 68415.m04504 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 407

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 99  LLVQQNNYQEPVIKYNTVFKMSGNTESTSNSIKFA 203
           L++Q   YQ   I++N   K +GNT  + + + FA
Sbjct: 141 LVIQGRGYQNTSIEWNDTAKSAGNTADSFSFVVFA 175


>At2g30350.2 68415.m03694 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 368

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +2

Query: 194 QICSDANVSFIS*FDASSKRADTPDSSFLSADESDDDSVGETVSKKPSTNNKINRD 361
           Q+C+  ++ + +  D SS+  D         D+ DDD     +S+  ++N   + D
Sbjct: 167 QVCAMEDLQYFTKVDDSSQPEDEESPEVNEEDDDDDDDDSSNLSQPGNSNTSSSDD 222


>At2g30350.1 68415.m03693 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 334

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +2

Query: 194 QICSDANVSFIS*FDASSKRADTPDSSFLSADESDDDSVGETVSKKPSTNNKINRD 361
           Q+C+  ++ + +  D SS+  D         D+ DDD     +S+  ++N   + D
Sbjct: 133 QVCAMEDLQYFTKVDDSSQPEDEESPEVNEEDDDDDDDDSSNLSQPGNSNTSSSDD 188


>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
           3-ketoacyl-CoA thiolase 1 (PKT1) identical to
           3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
           GI:3169568
          Length = 457

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +3

Query: 105 VQQNNYQEPVIKYNTVFKMSGNTESTSNSIKFAPMPMSALLANLMPLQKEQIPLIQVF 278
           V+ N+    + K  TVFK +G+T +  N+ + +    + LL       K+ +P++ VF
Sbjct: 265 VRPNSNMADLAKLKTVFKQNGST-TAGNASQISDGAGAVLLMKRSLAMKKGLPILGVF 321


>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
           3-ketoacyl-CoA thiolase 1 (PKT1) identical to
           3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
           GI:3169568
          Length = 414

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +3

Query: 105 VQQNNYQEPVIKYNTVFKMSGNTESTSNSIKFAPMPMSALLANLMPLQKEQIPLIQVF 278
           V+ N+    + K  TVFK +G+T +  N+ + +    + LL       K+ +P++ VF
Sbjct: 222 VRPNSNMADLAKLKTVFKQNGST-TAGNASQISDGAGAVLLMKRSLAMKKGLPILGVF 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,685
Number of Sequences: 28952
Number of extensions: 216092
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)