Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1138
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O57146 Cluster: H85; n=5; Human herpesvirus 6|Rep: H85 ...    34   3.2  
UniRef50_Q1FH74 Cluster: Helix-turn-helix, AraC type:Response re...    34   3.2  
UniRef50_O45532 Cluster: Putative uncharacterized protein clec-2...    34   3.2  
UniRef50_A0DUT4 Cluster: Chromosome undetermined scaffold_65, wh...    34   3.2  
UniRef50_A7PPL9 Cluster: Chromosome chr8 scaffold_23, whole geno...    33   4.2  
UniRef50_A5DE84 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_O58137 Cluster: Putative uncharacterized protein PH0400...    33   5.6  
UniRef50_Q60401 Cluster: Complement decay-accelerating factor pr...    33   7.3  
UniRef50_A7HPS3 Cluster: Putative methylisocitrate lyase; n=1; P...    32   9.7  

>UniRef50_O57146 Cluster: H85; n=5; Human herpesvirus 6|Rep: H85 -
           Human herpesvirus 6
          Length = 292

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 92  VHDLNKNRSIPIDGE--FHKKYEKYFGWLDFQIAGLASISAILFFYCLDGWTSSQPTCVK 265
           +H+LNK  ++ +D +  FH K+++    L  +       + +   + +D   +S  +C+K
Sbjct: 83  IHELNKINNLDVDSKLYFHIKHDRTTSLLKIKARSAYDATCLTCTFTVDNEKTSATSCLK 142

Query: 266 WLLEPI 283
            +++PI
Sbjct: 143 LIMKPI 148


>UniRef50_Q1FH74 Cluster: Helix-turn-helix, AraC type:Response
           regulator receiver; n=1; Clostridium phytofermentans
           ISDg|Rep: Helix-turn-helix, AraC type:Response regulator
           receiver - Clostridium phytofermentans ISDg
          Length = 522

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 2   SEMSISKLSRYCLQINSFLVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYEKYFG 166
           +EM +S  S Y L     +  +LL   DC +H++++         FH+ Y+K  G
Sbjct: 459 NEMGVS-FSEYLLNKRIHIATELLKNSDCPIHEISRIVGFESPSYFHRAYKKVTG 512


>UniRef50_O45532 Cluster: Putative uncharacterized protein clec-28;
           n=5; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein clec-28 - Caenorhabditis elegans
          Length = 402

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 89  EVHDLNKNRSIPIDGEFHKKYEKYFG--WLDFQIAGLASISAILFFYCLDGWTSSQPTCV 262
           E+ +L +  S P    + +K++ +    W +  I GLA I  I+F + L    + QP C 
Sbjct: 6   EIQELQEP-SQPKTQPYSEKFKLFMTNHWKNILIGGLAEIIIIVFAFMLTFILAKQPACE 64

Query: 263 KWLLEPIDIHNVNAPPTLRY 322
             ++     H    P TL Y
Sbjct: 65  TGIVTTSIFHTSTLPSTLTY 84


>UniRef50_A0DUT4 Cluster: Chromosome undetermined scaffold_65, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_65,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 232

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 32  YCLQINSFLVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYE-KYF 163
           YCL + SFL+ D LF   C V   N   +  I  E  +K + KYF
Sbjct: 177 YCLVMASFLILDALFTMICIVQGSNNRENQQISNELRQKIQRKYF 221


>UniRef50_A7PPL9 Cluster: Chromosome chr8 scaffold_23, whole genome
           shotgun sequence; n=6; Vitis vinifera|Rep: Chromosome
           chr8 scaffold_23, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 713

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 255 VGCELVHPSKQ*KNKIAEILARPAIWKSSHPKYFSYFLW 139
           + C+L+HP  +  ++  E++ R   W S HP +  +F W
Sbjct: 194 LSCDLLHPGSKEGSEFFEVMVRVMEW-SGHPNFADFFPW 231


>UniRef50_A5DE84 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 708

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 344 SYNGCLTLQTETH-YYFTAEIGRVVVPTRVDSQE 442
           SY+GCL LQ   H    ++E G+ VVPT+ D  E
Sbjct: 132 SYDGCLILQVYDHRNMISSETGKPVVPTKEDPSE 165


>UniRef50_O58137 Cluster: Putative uncharacterized protein PH0400;
           n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
           protein PH0400 - Pyrococcus horikoshii
          Length = 131

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 404 GRVVVPTRVDSQEVLPPVITQIIILKISFLSHDVILHRG 520
           G  + P  +DS  VLPP  T  I+ K+SF S  V ++RG
Sbjct: 64  GTFMNPLYIDSFLVLPPFATSFILGKLSFSSKAVSINRG 102


>UniRef50_Q60401 Cluster: Complement decay-accelerating factor
           precursor (CD55 antigen) [Contains: Complement
           decay-accelerating factor, GPI-anchored isoform]; n=9;
           Cavia porcellus|Rep: Complement decay-accelerating
           factor precursor (CD55 antigen) [Contains: Complement
           decay-accelerating factor, GPI-anchored isoform] - Cavia
           porcellus (Guinea pig)
          Length = 507

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
 Frame = +2

Query: 233 GWTSSQPTCVKWLL-EPIDIHN---VNAPPTLRYKF*GLKYSYNGCLTLQTETHY--YFT 394
           GW+SS PTC+K +  EP  I N   VN   T  Y+   + Y  N    L  ++H      
Sbjct: 211 GWSSSLPTCIKIICPEPPQIENGRIVNEEDTYEYRH-VVTYECNKGFVLTGKSHISCIVR 269

Query: 395 AEIGRVVVP---TRVDSQEVLPP 454
            ++G    P    RV S  V+PP
Sbjct: 270 DDVGEWSDPPPTCRVKSPPVIPP 292


>UniRef50_A7HPS3 Cluster: Putative methylisocitrate lyase; n=1;
           Parvibaculum lavamentivorans DS-1|Rep: Putative
           methylisocitrate lyase - Parvibaculum lavamentivorans
           DS-1
          Length = 289

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 382 LLLHGRNRQGGSTHPCRLTRGPTTSNYANYYFEDFIFITRCYSSPWKSIVNVE 540
           L+  G N  GG  +  RLTR    +  A    ED +F  RC     K +V +E
Sbjct: 77  LIADGDNGHGGPLNAARLTRAYEAAGAACIQIEDQVFPKRCGHMEGKEVVALE 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,326,610
Number of Sequences: 1657284
Number of extensions: 12788001
Number of successful extensions: 28672
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28668
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)