Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1138
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   1.7  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   3.8  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   6.7  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   6.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   8.9  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   8.9  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 192 RPAIWKSSHPKYFSYFLWNSPSIGILRFLFKSCTSQSFPNNRS 64
           RPAIW+   PK   Y+ + S      + + +S   ++F N +S
Sbjct: 600 RPAIWEKGFPKRNPYYKFTSTINRFRKAMIESKDGEAFLNMQS 642


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 584 QAGTNFCNEIRTQQHSTFTIDFH 516
           Q     CN++ ++ HS FTI  H
Sbjct: 272 QVAATKCNDLSSRSHSIFTITLH 294


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 183 IWKSSHPKYFSYFLWNSPSIGILRFLF 103
           IWK  H +  S + W SPSIG +  +F
Sbjct: 48  IWKV-HVELPSEYPWKSPSIGFVNRIF 73


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 143 KKYEKYFGWLDFQIAGLASISAILFFYCLDGWTSSQPTCVKWLL 274
           K+Y  YF +    IA    I   +F Y  DG T      V+W+L
Sbjct: 50  KRYLIYFCYCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWIL 93


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 209 ILFFYCLDGWTSSQPTC 259
           IL F+CL  W   Q TC
Sbjct: 331 ILHFHCLRNWLERQQTC 347


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 236 WTSSQPTCVKWLLEPIDIHNVNAPPTLR 319
           +++SQP  +K    P+DI N++A   L+
Sbjct: 222 YSASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 355 LPYPSNRNALLLHGRNR 405
           LPY  N   L LHG NR
Sbjct: 198 LPYTGNSRGLYLHGLNR 214


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 545 QHSTFTIDFHGEE*HR 498
           +H+T T++FH E  HR
Sbjct: 447 EHNTITVEFHDETTHR 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,415
Number of Sequences: 5004
Number of extensions: 55344
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)