Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1138
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956     29   4.0  
07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446           28   6.9  
01_01_0843 + 6582822-6583004,6583366-6583464,6583571-6583651,658...    28   6.9  
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411...    27   9.2  
03_05_0514 - 25082662-25082669,25082978-25083043,25083903-250840...    27   9.2  

>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
          Length = 397

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 352 WLPYPSNRNALLLHGRNRQGGSTHPC 429
           W PY     +   H  + QGG  HPC
Sbjct: 322 WPPYGHGYTSYYHHHHHHQGGQAHPC 347


>07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446
          Length = 578

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 216 NKIAEILARPAIWKSSHPKYFSYFLWNS 133
           N+ AE+ A   +WKS H   F + +WN+
Sbjct: 480 NQNAEVTAHQLLWKSKHEAAF-FHVWNT 506


>01_01_0843 +
           6582822-6583004,6583366-6583464,6583571-6583651,
           6585632-6585889
          Length = 206

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 14  ISKLSRYCLQINSFLVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYEKYFGWL 172
           + +++R   Q N  +     FG  C  + + K     +DG   K+Y+ Y GW+
Sbjct: 23  VGRVARRAYQRNGVVTDVKSFGTICLGYGIKK-----LDGRHFKEYQDYSGWV 70


>03_06_0720 +
           35739383-35739391,35739802-35740275,35740695-35741122,
           35741273-35741351
          Length = 329

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 391 HGRNRQGGSTHPCRLTRGPTTSNYANYYF 477
           HG+ R+GGS  P    RG TTS Y + Y+
Sbjct: 18  HGQQRRGGSPPP----RGRTTSVYRSGYY 42


>03_05_0514 -
           25082662-25082669,25082978-25083043,25083903-25084017,
           25084769-25084843,25085285-25085338,25085420-25085471,
           25087308-25087447,25087993-25088077,25088358-25088431,
           25088533-25088616,25088617-25088653,25089569-25089872,
           25090371-25090536,25091053-25091076
          Length = 427

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 168 HPKYFSYFLWNSPSIGILRFLFKSC---TSQSFPNNRS*TKKLLICKQYRDNFDIDISL 1
           +P Y  +FL +  SIG    +F      TS S    RS TKK   C QY+   D   SL
Sbjct: 128 NPLYPLHFLVDECSIGFSGVIFSMIVIETSLSGVQTRSLTKKCFKCAQYQVCVDFAGSL 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,286,531
Number of Sequences: 37544
Number of extensions: 347840
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)