Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1138
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)                      29   2.3  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   3.1  
SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17)          27   9.4  
SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)
          Length = 423

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 539 SVVEYVFHYKNWYPPDIRTPVHRS---TRLH 622
           S VEY+ + K WYP D+   + R+   TR+H
Sbjct: 352 SAVEYISNEKGWYPYDVSMNIIRNSHYTRIH 382


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2    SEMSISKLSRYCLQINSF-LVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYEKYFGWLDF 178
            SE+ ++++ RY      F L+ ++LF          + + I  +G  +  +E Y+ W++ 
Sbjct: 1244 SELLVTRIDRYAGNFMIFVLLCEILFVLFTVYFTYKQGKEIAREGVAYHFHE-YWSWVEL 1302

Query: 179  QIAGLASISAILFF 220
             ++G +  S +L+F
Sbjct: 1303 VLSGCSWTSIVLYF 1316


>SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17)
          Length = 897

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +2

Query: 2   SEMSISKLSRYCLQINSFLVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYEK--YFGW 169
           +E  + K + YC Q      Q ++   + E+        +P+D  F + Y +   FGW
Sbjct: 545 TEKGMLKFTWYCKQKEESFKQHMILRNEIEIFTPRYWTILPVDSPFGRPYRERGCFGW 602


>SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 83  DCEVHDLNKNRSIPIDGEFHKKYEKYFGWL 172
           D +V    ++  +P DG  H  Y+ Y  W+
Sbjct: 496 DIKVSSYLRDHCVPSDGRLHGNYQNYQAWV 525


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,899,712
Number of Sequences: 59808
Number of extensions: 411644
Number of successful extensions: 987
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)