Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1138
         (625 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060368-1|AAL25407.1|  367|Drosophila melanogaster LD22570p pro...    30   2.9  
AF172257-1|AAF87943.1|  367|Drosophila melanogaster innexin 2 pr...    30   2.9  
AF137269-1|AAD50378.1|  367|Drosophila melanogaster gap junction...    30   2.9  
AE014298-988|AAN09193.1|  367|Drosophila melanogaster CG4590-PB,...    30   2.9  
AE014298-987|AAF46229.1|  367|Drosophila melanogaster CG4590-PA,...    30   2.9  
BT030421-1|ABO52841.1|  491|Drosophila melanogaster IP17579p pro...    29   5.1  
AY069395-1|AAL39540.2|  334|Drosophila melanogaster LD10028p pro...    28   8.9  

>AY060368-1|AAL25407.1|  367|Drosophila melanogaster LD22570p
           protein.
          Length = 367

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/99 (25%), Positives = 43/99 (43%)
 Frame = +2

Query: 5   EMSISKLSRYCLQINSFLVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYEKYFGWLDFQI 184
           E+ +  +  YC   ++F V + L G       +       ++GE   KY KY+ W+ F  
Sbjct: 58  EIPLGVMDTYCWIYSTFTVPERLTGITGR-DVVQPGVGSHVEGEDEVKYHKYYQWVCF-- 114

Query: 185 AGLASISAILFFYCLDGWTSSQPTCVKWLLEPIDIHNVN 301
             +    AILF+     W S +   +K L+  ++   VN
Sbjct: 115 --VLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIVN 151


>AF172257-1|AAF87943.1|  367|Drosophila melanogaster innexin 2
           protein.
          Length = 367

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/99 (25%), Positives = 43/99 (43%)
 Frame = +2

Query: 5   EMSISKLSRYCLQINSFLVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYEKYFGWLDFQI 184
           E+ +  +  YC   ++F V + L G       +       ++GE   KY KY+ W+ F  
Sbjct: 58  EIPLGVMDTYCWIYSTFTVPERLTGITGR-DVVQPGVGSHVEGEDEVKYHKYYQWVCF-- 114

Query: 185 AGLASISAILFFYCLDGWTSSQPTCVKWLLEPIDIHNVN 301
             +    AILF+     W S +   +K L+  ++   VN
Sbjct: 115 --VLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIVN 151


>AF137269-1|AAD50378.1|  367|Drosophila melanogaster gap junction
           protein prp33 protein.
          Length = 367

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/99 (25%), Positives = 43/99 (43%)
 Frame = +2

Query: 5   EMSISKLSRYCLQINSFLVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYEKYFGWLDFQI 184
           E+ +  +  YC   ++F V + L G       +       ++GE   KY KY+ W+ F  
Sbjct: 58  EIPLGVMDTYCWIYSTFTVPERLTGITGR-DVVQPGVGSHVEGEDEVKYHKYYQWVCF-- 114

Query: 185 AGLASISAILFFYCLDGWTSSQPTCVKWLLEPIDIHNVN 301
             +    AILF+     W S +   +K L+  ++   VN
Sbjct: 115 --VLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIVN 151


>AE014298-988|AAN09193.1|  367|Drosophila melanogaster CG4590-PB,
           isoform B protein.
          Length = 367

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/99 (25%), Positives = 43/99 (43%)
 Frame = +2

Query: 5   EMSISKLSRYCLQINSFLVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYEKYFGWLDFQI 184
           E+ +  +  YC   ++F V + L G       +       ++GE   KY KY+ W+ F  
Sbjct: 58  EIPLGVMDTYCWIYSTFTVPERLTGITGR-DVVQPGVGSHVEGEDEVKYHKYYQWVCF-- 114

Query: 185 AGLASISAILFFYCLDGWTSSQPTCVKWLLEPIDIHNVN 301
             +    AILF+     W S +   +K L+  ++   VN
Sbjct: 115 --VLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIVN 151


>AE014298-987|AAF46229.1|  367|Drosophila melanogaster CG4590-PA,
           isoform A protein.
          Length = 367

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/99 (25%), Positives = 43/99 (43%)
 Frame = +2

Query: 5   EMSISKLSRYCLQINSFLVQDLLFGKDCEVHDLNKNRSIPIDGEFHKKYEKYFGWLDFQI 184
           E+ +  +  YC   ++F V + L G       +       ++GE   KY KY+ W+ F  
Sbjct: 58  EIPLGVMDTYCWIYSTFTVPERLTGITGR-DVVQPGVGSHVEGEDEVKYHKYYQWVCF-- 114

Query: 185 AGLASISAILFFYCLDGWTSSQPTCVKWLLEPIDIHNVN 301
             +    AILF+     W S +   +K L+  ++   VN
Sbjct: 115 --VLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIVN 151


>BT030421-1|ABO52841.1|  491|Drosophila melanogaster IP17579p
           protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 204 EILARP-AIWKSSHPKYFSYFLWNSPSIGILRF 109
           EI   P AIW SS   +F Y L+N  ++G++ +
Sbjct: 252 EIFETPEAIWTSSDGTHFMYALFNDTNVGMMTY 284


>AY069395-1|AAL39540.2|  334|Drosophila melanogaster LD10028p
           protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 470 IILKISFLSHDV-ILHRGNRS*TLSVVEYVFHYKNWYPPDIRTPVHRSTRLHP 625
           I LK+SFL   V +L R         V+   H K W  P +R   HR  +L P
Sbjct: 10  IALKMSFLRSAVGLLARVKLLEGSPTVQTRRHIKRWVSPTLRELAHRQKKLGP 62


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,790,959
Number of Sequences: 53049
Number of extensions: 585375
Number of successful extensions: 1192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)