Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1138
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81542-8|CAB04417.2|  402|Caenorhabditis elegans Hypothetical pr...    34   0.095
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    30   1.2  
Z81542-9|CAI79191.1|  400|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U97012-5|AAK39149.1|  515|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z81542-8|CAB04417.2|  402|Caenorhabditis elegans Hypothetical
           protein F49A5.5a protein.
          Length = 402

 Score = 33.9 bits (74), Expect = 0.095
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 89  EVHDLNKNRSIPIDGEFHKKYEKYFG--WLDFQIAGLASISAILFFYCLDGWTSSQPTCV 262
           E+ +L +  S P    + +K++ +    W +  I GLA I  I+F + L    + QP C 
Sbjct: 6   EIQELQEP-SQPKTQPYSEKFKLFMTNHWKNILIGGLAEIIIIVFAFMLTFILAKQPACE 64

Query: 263 KWLLEPIDIHNVNAPPTLRY 322
             ++     H    P TL Y
Sbjct: 65  TGIVTTSIFHTSTLPSTLTY 84


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 206 AILFFYCLDGWTSSQPTCVKWLLEPIDIHNVNAP 307
           A L +YCL       P   KWL EPI  H+ +AP
Sbjct: 611 AYLTYYCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>Z81542-9|CAI79191.1|  400|Caenorhabditis elegans Hypothetical
           protein F49A5.5b protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 89  EVHDLNKNRSIPIDGEFHKKYEKYFG--WLDFQIAGLASISAILFFYCLDGWTSSQPTCV 262
           E+ +L +  S P    + +K++ +    W +  I GLA I  I+F + L    + QP C 
Sbjct: 6   EIQELQEP-SQPKTQPYSEKFKLFMTNHWKNILIGGLAEIIIIVFAFMLTFILAKQPAC- 63

Query: 263 KWLLEPIDIHNVNAPPTLRY 322
           + +   I  H    P TL Y
Sbjct: 64  ETVTTSI-FHTSTLPSTLTY 82


>U97012-5|AAK39149.1|  515|Caenorhabditis elegans Hypothetical
           protein C04E6.5 protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 246 ELVHPSKQ*KNKIAEILARPAIWKSSHPKYFSYFLWNSPSIGILRFLFKSCTSQSFPN-N 70
           +L HPSK   N  +   A P ++++S PK  S  +      G      K+ +S+SF   N
Sbjct: 81  QLEHPSKNATNTGSRKRAHPKLFEASEPKVKSSNVSTDVIDGKKHNNRKTNSSRSFSKVN 140

Query: 69  RS*TKKLL 46
            S T+KL+
Sbjct: 141 SSVTRKLV 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,794,128
Number of Sequences: 27780
Number of extensions: 305352
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)