Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1137
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    27   0.18 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   3.9  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   3.9  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   3.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   8.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 532 PVLDQSVLCTIPYKSPPVMWDPTLTFNGLNSQSTSL 425
           P+     L  I    PP   +P +TFN LN   T L
Sbjct: 161 PLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHTPL 196


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 546 PKPREQLPISHRPGTTKSPTWCWRRSSTVSGRSTACL 656
           P+P  ++P++  P    SP      SST S  S A +
Sbjct: 80  PEPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVM 116


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -1

Query: 343 PSKMEPK-IPGPSSTDKGFPVR--STGSPTVTPK 251
           P K  P+  P PSST    P +  ST +PT + +
Sbjct: 66  PWKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSR 99


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 186 IVTDTDQLVHSRSGHFFGSDDGSRY--GEDISE 94
           I+T TDQ V +R+   F  DD  RY  G ++S+
Sbjct: 13  ILTPTDQRVVTRTIPSFLRDDVERYPSGPELSD 45



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 393  IPKGINVPSLAREVDW 440
            I  G +VP LA+ +DW
Sbjct: 1569 IDAGYDVPVLAQNLDW 1584



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 393  IPKGINVPSLAREVDW 440
            +  G +VP+L++ +DW
Sbjct: 1994 VDAGYDVPTLSKYLDW 2009


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 355 GR*IPSKMEPKIPGPSSTDKGFP 287
           GR  PS   P+I  PSST  G P
Sbjct: 63  GRKSPSS--PRISSPSSTKSGSP 83


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 534 CWSRPKPREQLPISHRP 584
           C SRPK +E  P  H P
Sbjct: 92  CTSRPKLQEPQPSQHCP 108


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 504 VQRTLWSSTGCWSRPKPREQLPISHRPGTTKSP 602
           + +TL  S+     P P+    ++ +P +TK+P
Sbjct: 378 IHQTLGGSSNEIVEPVPQPVEEVTQKPSSTKAP 410


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 447 NPLNVKVGSHITGGDLYGIVQRTLWSSTGCWSRPKPREQLPISHRPG 587
           N + +K+      G    ++ R L  S GC S+   R Q   S RPG
Sbjct: 57  NHIRLKIVEMAANGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 103



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 466 SDPTSPVEICMVLYREHSGQAQDVGPAQSQGNSYLYRTGR 585
           ++PT   + C VL+++ S   + V    S+    L R  R
Sbjct: 182 TNPTIKEDFCAVLWKDKSTDNEGVSDCDSEPGIPLKRKQR 221


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 525 STGCWSRPKPREQLPISHRPGTTK 596
           S G  S   P E LP+   PG  K
Sbjct: 329 SDGATSEALPFELLPLDSEPGMLK 352


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +3

Query: 579 RPGTTKSPTW-CWRRSSTVS 635
           RPG   +P W C R SS  +
Sbjct: 46  RPGVVTTPRWGCARASSATT 65


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 613 QHHVGDFVVPGRCDIGNCSLGFG 545
           Q   G+ + P   D G C  G+G
Sbjct: 356 QDDAGNLISPSINDDGTCGNGYG 378


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,405
Number of Sequences: 336
Number of extensions: 3766
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)