Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1137
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 118 6e-28
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 40 3e-04
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 31 0.19
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.45
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 27 1.8
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 2.4
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 2.4
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 2.4
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 27 2.4
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 26 5.5
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 7.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.6
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 9.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.6
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 9.6
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 25 9.6
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 9.6
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 118 bits (285), Expect = 6e-28
Identities = 55/103 (53%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
Frame = +3
Query: 255 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREV 434
G+TVGDPV RTGKPLSVELGPG+ +I+DGIQRPLK I + +QSIYIP+GIN SL RE
Sbjct: 79 GLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPRGINTESLNREH 138
Query: 435 DWEFNP-LNVKVGSHITGGDLYG-IVQRTLWSSTGCWSRPKPR 557
W+F P ++++G H++GGD++G + + +L++ P+ R
Sbjct: 139 KWDFTPNKDLRIGDHVSGGDVFGSVFENSLFNDHKIMLPPRAR 181
Score = 89.0 bits (211), Expect = 5e-19
Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = +1
Query: 46 SKGGLRTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGD 222
+K +R++ N +E+E R+G +F+VSGPVV A M G +MYELVRVG+ ELVGE+IR+ D
Sbjct: 8 AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67
Query: 223 MATIQVYEETS 255
TIQVYEETS
Sbjct: 68 KCTIQVYEETS 78
Score = 59.3 bits (137), Expect = 5e-10
Identities = 25/49 (51%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 ENTLVK-HRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSM 652
EN+L H++++PP+A+GTVTYIA AG+Y V + +LE EF+G++ +SM
Sbjct: 165 ENSLFNDHKIMLPPRARGTVTYIAEAGSYHVDEKLLEVEFNGKKHSFSM 213
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +3
Query: 255 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLARE 431
G+ G V+ TG P+S+ +GPG LG I + I P+ + + Y P + PS +
Sbjct: 115 GLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQ 173
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 213 KTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRYGEDISEPLLILLIGDRP 61
+T +L E DTD+ VHS+S GS+ S D E +I ++G P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 346 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPKFLRI 239
IPS + P P T GFP R PT+ P +++
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPDSIKV 403
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 427 GRSTGNLTH*MLRSDPTSPVEICMVLYREH 516
GR+ L H +LR D T+ E+C + EH
Sbjct: 167 GRTKQELAHELLRRDMTAVAELCDDEFEEH 196
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 529 VLDQSVLCTIPYKSPPVMWD 470
VLDQS L P ++ P++WD
Sbjct: 511 VLDQSHLSPFPSRTRPILWD 530
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 155 ADPDIFSAVTTGPDTAKTYPN 93
AD +F AV PDTAK YPN
Sbjct: 33 ADAVVFKAVGVAPDTAK-YPN 52
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 2.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 247 LRIPGWWPC 221
LR+P WWPC
Sbjct: 78 LRVPNWWPC 86
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = -1
Query: 544 RDQHPVLDQSVLCTIPYKSPPVMWDPTLTFNGLNSQSTSLAREGTLIP 401
++ P Q + Y PP W+ + + N+ ST ++ +L+P
Sbjct: 597 QNSQPSASQLTIVDATYSQPPPRWESSSRDDKTNTSSTQPSQVDSLVP 644
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 483 GGDLYGIVQRTLWSSTGCWSRPKPREQLPISHRPGTTKSPT 605
G ++ + R SS+G + P P+ +LP P ++S T
Sbjct: 180 GNKMFSLKSRVPSSSSGSFVAPPPQMRLPAYSSPQKSRSNT 220
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 463 RSDPTSPVEICMVLYREHSGQAQDVGPAQSQG 558
R D TSP E CM + R H V + G
Sbjct: 329 RLDATSPAEACMHVLRGHLASVNSVQYSSKTG 360
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.6
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Frame = +2
Query: 152 LLCTSWSVSVTMNSSVRLSVLKVTW-PPSRYTKKLR-CN-----CR*SSTPYWKAFVS-- 304
L+C SW+ V + + V + PP+R+ KK C C S + V+
Sbjct: 930 LICASWTPDVYVPAEESEPVCGIAQLPPNRWEKKCEVCGNSFGVCVSSPNSGLTSHVTCA 989
Query: 305 RTWSWYLGFHL*RYSASP 358
+WYLGF + SP
Sbjct: 990 EKANWYLGFEFVKQDQSP 1007
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 466 TLTFNGLNSQSTSLAREGTLI 404
T FNGL + TSLA + TL+
Sbjct: 24 TFGFNGLGTSRTSLAPQRTLV 44
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 167 WSVSVTMNSSVRLSVLKVTWPPSRYTKKLR 256
WS+ + +N RL K P RY+K +R
Sbjct: 3473 WSLDLLLNDLARLCSRKTLAPRPRYSKIVR 3502
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = -3
Query: 395 DVDGLSQLVDVLEGTLNTVKDGTQDTRTKFY*QRLSSTEYWITYSYTEVSS 243
D+D ++ L +N + D TK+Y + WIT Y + S
Sbjct: 38 DLDATKDQIETLTQEINFLIDLNSVHITKYYASFVDGFRLWITMEYCDGGS 88
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 500 YCTENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFDGE 634
+C++ T +K R + KG IA + +YK T ++ + D E
Sbjct: 60 FCSQATNIKDRTWNLKEFKGIELDIAKSDSYKYTFIIKDCHQDWE 104
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 146 DIFSAVTTGPDTAKTYPNLSSFSSLAIVLK 57
D + GP +T+PN+ S +SLA+ K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,764
Number of Sequences: 5004
Number of extensions: 62551
Number of successful extensions: 179
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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