Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1137
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 112 2e-25
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 106 2e-23
11_01_0617 - 4939108-4939259,4939584-4940259 32 0.46
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303... 31 1.1
01_06_0813 - 32165310-32165546,32165691-32165783,32166075-321662... 30 1.4
04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456... 29 3.3
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 4.3
02_01_0299 + 2001938-2002510,2002821-2003033,2003129-2003333,200... 28 5.7
12_02_0881 - 23970143-23970433,23970814-23971116,23971490-239720... 28 7.5
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 28 7.5
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 28 7.5
08_02_1092 + 24267737-24268641,24269005-24269884 27 9.9
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 27 9.9
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 27 9.9
02_04_0098 + 19701999-19702185,19703698-19704551,19704732-197048... 27 9.9
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 112 bits (270), Expect = 2e-25
Identities = 52/84 (61%), Positives = 64/84 (76%)
Frame = +3
Query: 255 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREV 434
G+ V DPVLRT KPLSVELGPGILG+IFDGIQRPLK I + +YIP+G++VP+L ++
Sbjct: 111 GLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAIKSGDVYIPRGVSVPALDKDQ 170
Query: 435 DWEFNPLNVKVGSHITGGDLYGIV 506
W+F P + VG ITGGDLY V
Sbjct: 171 LWDFEPKKLGVGDAITGGDLYATV 194
Score = 84.6 bits (200), Expect = 6e-17
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +1
Query: 91 RFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETS 255
R G V AVSGPVV A+ M G+AMYELVRVG + L+GEIIRLEGD ATIQVYEET+
Sbjct: 56 RIGGVLAVSGPVVVADGMGGAAMYELVRVGNDNLIGEIIRLEGDSATIQVYEETA 110
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +2
Query: 509 ENTLVKHRMLVPPKAKGTVTYIAPAGNYKV 598
ENTL+KH + +PP + G ++YIAPAG Y +
Sbjct: 196 ENTLMKHHVALPPGSMGKISYIAPAGQYSL 225
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 106 bits (254), Expect = 2e-23
Identities = 53/89 (59%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
Frame = +3
Query: 255 GVTVGDPVLRTGK-----PLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPS 419
G+ V DPVLRT K PLSVELGPGILG+IFDGIQRPLK I + +YIP+G++VP+
Sbjct: 73 GLMVNDPVLRTRKVMPAQPLSVELGPGILGNIFDGIQRPLKTIAIKSGDVYIPRGVSVPA 132
Query: 420 LAREVDWEFNPLNVKVGSHITGGDLYGIV 506
L ++ W F P + VG ITGGDLY IV
Sbjct: 133 LDKDALWHFKPEKLGVGDIITGGDLYAIV 161
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/72 (62%), Positives = 54/72 (75%)
Frame = +1
Query: 40 MASKGGLRTIANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEG 219
MA + T + E E +GYV VSGPVV A+ M G+AMYELVRVG++ L+GEIIRLEG
Sbjct: 1 MAFGDRITTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEG 60
Query: 220 DMATIQVYEETS 255
D ATIQVYEET+
Sbjct: 61 DSATIQVYEETA 72
Score = 60.9 bits (141), Expect = 9e-10
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +2
Query: 509 ENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSM 652
ENTL++H++ +PP A G ++YIAPAG Y + D VLE EF G +++++M
Sbjct: 163 ENTLMQHKVALPPGAMGKISYIAPAGQYSLQDTVLELEFQGIKKEFTM 210
>11_01_0617 - 4939108-4939259,4939584-4940259
Length = 275
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 58 LRTIANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATI 234
L +A EE+EER G F V+ + +A+++ VR+G LVG ++ + +A +
Sbjct: 116 LLDMAMEEDEERGGARFRVADVLEKQNGRRETALHDAVRLGDERLVGHLMAVHPRLARL 174
>02_03_0138 -
15629421-15629440,15629521-15629752,15630115-15630348,
15630486-15630709,15631225-15631509,15631549-15631690
Length = 378
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 548 KAKGTVTYIAPAGNYKVTDVVLE 616
KA+ T++ AGNY+VTDVVLE
Sbjct: 71 KARMTISLDRGAGNYEVTDVVLE 93
>01_06_0813 -
32165310-32165546,32165691-32165783,32166075-32166218,
32166685-32166771,32166858-32167077,32167879-32168039
Length = 313
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -2
Query: 192 EFIVTDTDQLVHSRSGHFFGSDDGSRYGEDISEPLL 85
EF+V +T++L H + G + D+ + ED+ EPLL
Sbjct: 115 EFMVRETEKL-HQQVGRYKSPDEHPFFPEDLPEPLL 149
>04_04_0028 -
22243272-22243577,22244564-22244713,22244919-22245656,
22247233-22247331,22247541-22247933,22248806-22248961
Length = 613
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 128 SLPKKCPDLLCTSWSVSVTMNSSVRLSVLKVTW 226
+ P CPDL+CT S + ++R SVL W
Sbjct: 210 AFPGCCPDLICTILS-KLPQKEAIRTSVLSSKW 241
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 136 EKMSGSAMYELVRVGYNELVGEI 204
EKMS + EL+ +GYN+L G I
Sbjct: 469 EKMSNLSSLELIDLGYNQLTGAI 491
>02_01_0299 +
2001938-2002510,2002821-2003033,2003129-2003333,
2003485-2003560,2003665-2003800,2003905-2004009,
2004095-2004172,2004264-2004353,2004441-2004506,
2004836-2004892,2004996-2005073,2005165-2005212,
2005330-2005401
Length = 598
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 37 KMASKGGLRTIANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEII 207
K + G + T+A+ E EE+ G +F GP+ + G+ ++ VG +G I+
Sbjct: 124 KFSRLGQMSTVASPEQEEQEGVLFRGGGPMCDF-AVPGAQDTTVLVVGATSRIGRIV 179
>12_02_0881 -
23970143-23970433,23970814-23971116,23971490-23972077,
23972606-23972761,23972852-23972910,23974294-23974561
Length = 554
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 297 LSVELGPGILGSIFDGIQRPLKDINELTQSI---YIPKGINVPSLAREVDWE 443
L LGP +LG DG R ++D+ + I +P + VP E W+
Sbjct: 92 LGRRLGPRLLGRGNDGSMRVMRDLYRMLDEINSEEVPVDLKVPDSFDEFIWD 143
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 116 LDPSSLPKKC--PDLLCTSWSVSVTMNSSVRLSVLKVTWPPSRYTKK 250
+DP+S+PK C PD LC S + V+ N LK + P R+ ++
Sbjct: 856 VDPASIPKHCAAPDNLCFSRTWLVSFN-------LKEIYAPDRFARQ 895
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 613 QHHVGDFVVPGRCDIGNCSLGFGRDQHPVL 524
+HH GD VV RCD+ + +G P+L
Sbjct: 570 EHHEGDEVVWLRCDVYDTGIGIPEKSLPLL 599
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 542 PPKAKGTVTYIAPAGNYKVTDVVLETEF 625
PPK +APA N K +D LE EF
Sbjct: 566 PPKPAPATEKVAPAANQKGSDNYLEFEF 593
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 52 GGLRTIANEENEERFGYVFAVSGPVV-TAEKMSGSA 156
GG RT E+ EE+ V V GP++ K SG A
Sbjct: 621 GGARTAEKEDYEEKLKEVEQVCGPIIKQVYKKSGDA 656
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 474 GIRP*HLMG*IPSRPPWPGKAR 409
G RP MG PS PP PG++R
Sbjct: 33 GRRPASAMGQAPSSPPGPGRSR 54
>02_04_0098 +
19701999-19702185,19703698-19704551,19704732-19704890,
19705290-19705537,19705837-19705927,19706066-19706251
Length = 574
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 309 LGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWEFNPL 455
L G ++ GI RP +IN Q+I PK + P L V +NP+
Sbjct: 126 LPDGTPAILYTGIDRP--NINYQVQNIAFPKNASDPLLREWVKPAYNPV 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,598,821
Number of Sequences: 37544
Number of extensions: 466166
Number of successful extensions: 1417
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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