Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1137
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 74 9e-14
SB_22855| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_16897| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_44637| Best HMM Match : DUF1245 (HMM E-Value=6.1) 29 4.4
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044) 28 5.8
SB_3155| Best HMM Match : C1_4 (HMM E-Value=0.16) 28 5.8
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_242| Best HMM Match : AFP (HMM E-Value=0.45) 28 7.7
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 74.1 bits (174), Expect = 9e-14
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = +2
Query: 500 YCTENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSM 652
Y ENT +KH +++ PKAKGT+TYIAP GNY + D +LE +FDGE+ K+ M
Sbjct: 13 YVQENTFIKHHIMLHPKAKGTITYIAPQGNYYIEDTILEIDFDGEKSKHCM 63
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 465 VGSHITGGDLYGIVQRTLWSSTGCWSRPKPR 557
+G HITGGD+YG VQ + PK +
Sbjct: 1 IGDHITGGDIYGYVQENTFIKHHIMLHPKAK 31
>SB_22855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 463 RSDPTSPVEICMVLYREHSGQAQDVGPAQ 549
RS P PV++C V E SG D GP++
Sbjct: 8 RSKPEVPVQMCHVTSYEQSGVTDDEGPSK 36
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 103 VFAVSGPVVTAEKMSGSAMYELVRVGY---NELVGEIIRLEGDMATIQVYEETS 255
V V+GP+V + + E+V + ++ GE++ + G A +QV+E TS
Sbjct: 17 VSGVNGPLVILDNVKFPKFAEIVTLTLQDGSQRSGEVLEVSGSKAVVQVFEGTS 70
>SB_16897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 405 INVPSLAREVDWEFNPLNVKVGSHITGGDLYGIVQRTLWSSTG-CWSRPKPR 557
+ V L RE WEF+P N +G I G++ + W +T WS + R
Sbjct: 121 VEVLKLLRENFWEFDP-NYAIGPVIESGNIDAVRLCLEWGATDLVWSMDRAR 171
>SB_44637| Best HMM Match : DUF1245 (HMM E-Value=6.1)
Length = 241
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 405 INVPSLAREVDWEFNPLNVKVGSHITGGDLYGIVQRTLWSSTG-CWSRPKPR 557
+ V L RE WEF+P N +G I G++ + W +T WS + R
Sbjct: 121 VEVLKLLRENFWEFDP-NYAIGPVIESGNVNAVRLCLEWGATDLIWSMGRAR 171
>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/63 (28%), Positives = 21/63 (33%)
Frame = -1
Query: 589 VPGRCDIGNCSLGFGRDQHPVLDQSVLCTIPYKSPPVMWDPTLTFNGLNSQSTSLAREGT 410
VPG G C G D L + +PP PT T STS + T
Sbjct: 752 VPGSVKCGACPAGLSGDGKTCLASTSTSAATTTAPPTTAPPTTTKEPTTDASTSTSAATT 811
Query: 409 LIP 401
P
Sbjct: 812 TAP 814
>SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)
Length = 527
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 592 VVPGRCDIGNCSLGFGRDQHPVLDQSVLCTIPYKSPPVMWDPTLTFNGLNSQSTSLAREG 413
+ P DI N SL G HP+L Q+ + IP + PP + + L Q ++
Sbjct: 54 LAPVVADIYNSSLKDGY-LHPILKQAAVSPIPKQRPPATVEDDIRPIALTCQLAKMSEGF 112
Query: 412 TL 407
TL
Sbjct: 113 TL 114
>SB_3155| Best HMM Match : C1_4 (HMM E-Value=0.16)
Length = 295
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 467 RIPHHRWRFVWYCTENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEF 625
+IP HRWR ++ T+ + K+ ++ K+ G +T N D + E EF
Sbjct: 66 KIPTHRWRRLYGATQTSQTKNNAMITDKS-GKITLSVWGFN---IDKIQENEF 114
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 267 GDPVLRTGKPLSVELGPGILGSIFDGIQRPL 359
GD V RTG + V +G +LG + D + P+
Sbjct: 24 GDIVKRTGAIVDVPVGEELLGRVVDALGNPI 54
>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
Length = 147
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 290 SSTEYWITYSYTEVSSYTWMVA 225
S+T Y T SYT +SYTW+ +
Sbjct: 112 STTSYTCTTSYTCTTSYTWITS 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,038,244
Number of Sequences: 59808
Number of extensions: 516128
Number of successful extensions: 1520
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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