Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1137
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 132 2e-31
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 34 0.10
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 31 0.72
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 31 0.72
Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical pr... 29 3.8
U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat... 28 5.1
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi... 28 5.1
Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical... 27 8.9
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 132 bits (320), Expect = 2e-31
Identities = 60/89 (67%), Positives = 74/89 (83%), Gaps = 1/89 (1%)
Frame = +3
Query: 255 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREV 434
GVT+GDPVLRTGKPLSVELGPGI+GSIFDGIQRPLKDI ++TQSIYIPKG++ +L+RE
Sbjct: 61 GVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYIPKGVSTNALSREA 120
Query: 435 DWEF-NPLNVKVGSHITGGDLYGIVQRTL 518
W+F +++VG H+TGGD+ G V L
Sbjct: 121 RWDFVVSKDLRVGGHVTGGDIIGTVDENL 149
Score = 99 bits (238), Expect = 1e-21
Identities = 47/57 (82%), Positives = 52/57 (91%)
Frame = +1
Query: 85 EERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETS 255
E +G+V+ VSGPVVTAEKM+GSAMYELVRVG+ ELVGEIIRLEGD ATIQVYEETS
Sbjct: 4 ESSYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELVGEIIRLEGDYATIQVYEETS 60
Score = 68.1 bits (159), Expect = 5e-12
Identities = 27/48 (56%), Positives = 38/48 (79%)
Frame = +2
Query: 509 ENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSM 652
EN L+KH++L+PP A GT+T++AP+G Y V D +LE EF G +QK+SM
Sbjct: 147 ENLLIKHKILLPPSACGTITFVAPSGQYTVEDTLLELEFAGRKQKFSM 194
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +3
Query: 255 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAR-E 431
G+ G PV TG P+ + +GP LG I + I P+ + + + P
Sbjct: 127 GLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMS 186
Query: 432 VDWEFNPLNVKV 467
V+ E +KV
Sbjct: 187 VEQEILVTGIKV 198
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 267 GDPVLRTGKPLSVELGPGILGSIFDGIQRPL 359
GD V RTG + V +G G+LG + D + P+
Sbjct: 86 GDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 116
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 267 GDPVLRTGKPLSVELGPGILGSIFDGIQRPL 359
GD V RTG + V +G G+LG + D + P+
Sbjct: 113 GDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 143
>Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 366 INELTQSIYIPKGINVPSLAR--EVDWEFN----PLNVKVGSHITGGDLYGIVQRTLWSS 527
INE+ QS +P I +P + + W + L V + T D+ ++ +TL
Sbjct: 210 INEINQS-KVPTTIELPPNCKLFQYSWVLDGIPRTLLVPMPMDATEEDVKAMLPKTLEMD 268
Query: 528 TGCWSRPKPREQLPISHRPGTT 593
+ ++ +PR++LP+ P T
Sbjct: 269 SNLFNNARPRDELPVLSFPNGT 290
>Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 366 INELTQSIYIPKGINVPSLAR--EVDWEFN----PLNVKVGSHITGGDLYGIVQRTLWSS 527
INE+ QS +P I +P + + W + L V + T D+ ++ +TL
Sbjct: 210 INEINQS-KVPTTIELPPNCKLFQYSWVLDGIPRTLLVPMPMDATEEDVKAMLPKTLEMD 268
Query: 528 TGCWSRPKPREQLPISHRPGTT 593
+ ++ +PR++LP+ P T
Sbjct: 269 SNLFNNARPRDELPVLSFPNGT 290
>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
endocytosis protein6, isoform a protein.
Length = 1093
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 309 VLLTKAFQYGVLDHLQLHRSFFVYLDGGHVT--FKTDNLTDEFIVTDTDQLVHSR 151
V LTKA + GVLD +QL SF++ +D T F DN +E + + LV S+
Sbjct: 204 VYLTKALRKGVLDVIQL-GSFWLDIDAKQSTARFLRDNKQNEDRLPEYRALVVSK 257
>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans
receptor-mediated endocytosis 6 protein.
Length = 1093
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 309 VLLTKAFQYGVLDHLQLHRSFFVYLDGGHVT--FKTDNLTDEFIVTDTDQLVHSR 151
V LTKA + GVLD +QL SF++ +D T F DN +E + + LV S+
Sbjct: 204 VYLTKALRKGVLDVIQL-GSFWLDIDAKQSTARFLRDNKQNEDRLPEYRALVVSK 257
>Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical
protein F28B1.3 protein.
Length = 802
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -2
Query: 243 VYLD----GGHVTFKTDNLTDEFIVTDTDQLVHSRSGHF 139
VY+D G + + DN T EF+ DTD V H+
Sbjct: 283 VYMDRVSTDGRLKYLIDNCTSEFVCGDTDTFVVFNMNHY 321
>Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical
protein F44D12.2 protein.
Length = 342
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 646 VLLPLTVELRLQHHVGDFVVPGRCDIGNCSLGFGR 542
+L+ L V L H V V RC+ GN F R
Sbjct: 4 ILIQLIVLFTLFHEVNTLVTCSRCEFGNEECNFSR 38
>AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical
protein Y51A2D.7b protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 272 SSTPYWKAFVSRTWSWYLGFH-L*RYSASPQGHQRADSVHLH 394
++ P++ +++ W+ + G L +S P+ + DS+H+H
Sbjct: 526 ATVPFYPQMLAKMWAEFGGLRELIAFSFDPESPLKRDSIHVH 567
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,897,896
Number of Sequences: 27780
Number of extensions: 370376
Number of successful extensions: 1043
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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