Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1137
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 116 2e-26
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 38 0.008
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 38 0.008
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 38 0.008
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 32 0.39
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR... 30 1.6
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 29 3.6
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 28 4.8
At3g43682.1 68416.m04659 hypothetical protein 28 6.3
At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1) id... 28 6.3
At3g01040.1 68416.m00005 glycosyl transferase family 8 protein c... 27 8.3
At1g04940.1 68414.m00491 tic20 family protein similar to Tic20 (... 27 8.3
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 116 bits (278), Expect = 2e-26
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +3
Query: 255 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREV 434
G+TV DPVLRT KPLSVELGPGILG+IFDGIQRPLK I ++ +YIP+G++VP+L ++
Sbjct: 75 GLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIARISGDVYIPRGVSVPALDKDC 134
Query: 435 DWEFNPLNVKVGSHITGGDLYGIV 506
WEF P G ITGGDLY V
Sbjct: 135 LWEFQPNKFVEGDTITGGDLYATV 158
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/68 (66%), Positives = 55/68 (80%)
Frame = +1
Query: 52 GGLRTIANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMAT 231
G L T ++E E +GYV VSGPVV A+ M+G+AMYELVRVG++ L+GEIIRLEGD AT
Sbjct: 7 GKLTTFEDDEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSAT 66
Query: 232 IQVYEETS 255
IQVYEET+
Sbjct: 67 IQVYEETA 74
Score = 61.3 bits (142), Expect = 6e-10
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +2
Query: 509 ENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSM 652
ENTL+ H + +PP A G +TYIAPAG Y + D V+E EF G ++ Y+M
Sbjct: 160 ENTLMNHLVALPPDAMGKITYIAPAGQYSLKDTVIELEFQGIKKSYTM 207
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 255 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 422
G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 143 GLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 255 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 422
G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 146 GLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 201
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 255 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 422
G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 143 GLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 161 TSWSVSVTMNSSVRLS---VLKVTWPPSRYTKKLRCNCR*SSTPYWK 292
TS S + + S VR+S ++K+ W PS Y + C C S W+
Sbjct: 40 TSSSSTFSCTSKVRVSESSIVKIVWLPSEYGDAVACVCEDGSLSIWE 86
>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1059
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/34 (26%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 357 LKDINELTQSIYIPKGIN-VPSLAREVDWEFNPL 455
L+ + + ++ +Y+P+G+N +P R ++W++ P+
Sbjct: 613 LRVLRDRSEKLYLPQGLNYLPKKLRLIEWDYFPM 646
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 234 DGGHVTFKTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRYGED 103
DGGH + + D+ IV D D + R G G DG +D
Sbjct: 124 DGGHDDEDNNFVDDDVIVNDGDGVGEDRDGDSDGDGDGGDDDDD 167
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 381 QSIYIPKGINVPSLAREVDWEFNPLNVKVGSHI 479
+S+ P+G N+PS R++D + N N +GS +
Sbjct: 163 RSVDPPRGRNIPSSRRKIDVDNNNYNHTLGSSV 195
>At3g43682.1 68416.m04659 hypothetical protein
Length = 150
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 459 VKVGSHITGGDLYGIVQRTLWSSTGCWSRPKPREQLPISHRPGTTKSP 602
V+ S G L G V R W G + R PR L ++ +T+SP
Sbjct: 101 VRGASRSGRGILCGDVPRRFWRRLGTFPRHNPRGFLGLARDGSSTRSP 148
>At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1)
identical to chorismate mutase GB:Z26519 [SP|P42738]
[Arabidopsis thaliana]
Length = 340
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 192 EFIVTDTDQLVHSRSGHFFGSDDGSRYGEDISEPLL 85
E++V T++L H++ G F D+ + +D+ EP+L
Sbjct: 135 EYMVKGTEKL-HAKVGRFKSPDEHPFFPDDLPEPML 169
>At3g01040.1 68416.m00005 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 533
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 309 LGPGILGSIFDGIQRPLKDINELTQSI---YIPKGINVP 416
LGP +LG I D QR ++D ++ + IP G+ +P
Sbjct: 77 LGPRLLGRIDDSEQRLVRDFYKILNEVSTQEIPDGLKLP 115
>At1g04940.1 68414.m00491 tic20 family protein similar to Tic20
(GI:3769673) [Pisum sativum]; contains TIGRFAM IGR00994:
chloroplast protein import component, Tic20 family
Length = 501
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 519 WSSTGCWSRPKPREQLPISHR-PGTTKSPTWCWR 617
W + P+ + +P S R P TK P W WR
Sbjct: 80 WRTRKTLLTPRASKDVPSSFRFPPMTKKPQWWWR 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,917
Number of Sequences: 28952
Number of extensions: 354703
Number of successful extensions: 1036
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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