Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1136
         (667 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    45   0.002
UniRef50_A5K7M5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_Q11RD4 Cluster: A-glycosyltransferase-related protein, ...    33   8.2  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +1

Query: 550 SFFLALRWVDELTAHLGIK--WLPELIDIYNVNAPPT 654
           S FL LRWVDELTAHL +   W P    +Y+VNAPPT
Sbjct: 152 SRFLLLRWVDELTAHLVLSGYWSPR--HLYDVNAPPT 186


>UniRef50_A5K7M5 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 556

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 241 CINKRKAIRGPASQKSYYFNVCEARTSCLKKRCLH 137
           CI K K     + +K+ Y N+CE R  C KK+C+H
Sbjct: 307 CIGKIKFSNMTSKEKAIYSNLCEVRWPC-KKKCVH 340


>UniRef50_Q11RD4 Cluster: A-glycosyltransferase-related protein,
           glycosyltransferase family 4 protein; n=1; Cytophaga
           hutchinsonii ATCC 33406|Rep:
           A-glycosyltransferase-related protein,
           glycosyltransferase family 4 protein - Cytophaga
           hutchinsonii (strain ATCC 33406 / NCIMB 9469)
          Length = 378

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 282 KNLNFQGKFNKIPLYWSKINMFFFFHLCFIKALVY 386
           K   F   F K PL++++ N++ FF+L F KA +Y
Sbjct: 53  KTHRFNLWFEKGPLFYAQYNLYLFFYLLFHKADIY 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,714,599
Number of Sequences: 1657284
Number of extensions: 11470832
Number of successful extensions: 24979
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24938
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)