Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1136
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    29   0.034
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.42 
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    24   0.97 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   1.7  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   6.9  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 0.034
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +3

Query: 339 NMFFFFHLC--FIKALVYNVLHIF 404
           ++FFFF +C  FI  +V N++H+F
Sbjct: 73  HIFFFFAICCDFIALIVVNIVHVF 96


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 MFFFFHLCFIKALVYNVLHIFFV 410
           +FF  HL F+  L Y  LH+ F+
Sbjct: 187 IFFNMHLLFLLCLDYFTLHLLFL 209



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 336 INMFFFFHLCFIKALVYNVLHIFFV 410
           I  F++ HL F  A +   +H+ F+
Sbjct: 258 IYYFYYMHLLFCCAFIIFTMHLLFL 282


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 234 LIQKW*ISRRRVMDINKNLNFQGKFNKIPLYWSKINMFFFFHLCFIKALVYNVLHI 401
           L++ W      V ++    NF+ K + I  + + + +  +F LC    L ++V H+
Sbjct: 421 LMKAWLKIELLVGNLGMRRNFRKKLDFIFTFITLLTIGLYFQLCEFSRLNFSVEHL 476


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 258 RRRVMDINKNLNFQGKFNKIPLYWSKINMFFFFHLCFIKALVYNV 392
           RR    + KNL    K  K   Y      FF  HL +   ++Y++
Sbjct: 91  RRTWTRLLKNLESCAKIKKTKRYCYYYYAFFGVHLAYGVVIIYSI 135


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 285 NLNFQGKFNKIPLY 326
           N+NF   F KIP Y
Sbjct: 357 NINFVSTFFKIPFY 370


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,358
Number of Sequences: 336
Number of extensions: 3261
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)