Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1136
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   4.2  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.6  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   7.4  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.8  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 303 KFNKIPLYWSKINMFFFFHLCFIKALVYNVLHIF 404
           K  +I LYW  I+  FF+ + F+     +VL ++
Sbjct: 361 KKQRIRLYWKSISKGFFYRVIFVGFTQMSVLSMW 394


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 228 LLLIQKW*ISRRRVMDINKNLNFQGKFNKIPLYWSKINMFFFFHLCFIKALV 383
           L+ +  W I +   +    NL   GK   IPL+ S + +FFFF++  +K ++
Sbjct: 762 LICLSLWIIGQLLWLISAYNLEMLGKSVFIPLWLSGL-LFFFFNVYELKIIL 812


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 470 KTSFNCYLPIYLFIFILQKSDE 405
           KTSFN Y PI+L   I Q  D+
Sbjct: 566 KTSFNMYFPIFLLPRIEQCIDD 587


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 577 DELTAHLGIKWLPELIDIY 633
           D  T H+G+K+LP L +++
Sbjct: 264 DSYTDHIGLKFLPRLCELH 282


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 128  LIRRNDIKTLIKNGRDYVDIK*SGG 54
            LI++NDIKTL+++ +  V+ K + G
Sbjct: 1025 LIKKNDIKTLLQSDQLLVERKRNAG 1049


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,890
Number of Sequences: 5004
Number of extensions: 51710
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)