Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1136
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.4  
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_20389| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 42   PSILTATLFNINIISTVFNQGLYVISPNEHR*CKHLFLR 158
            P +L  ++ NIN  S VF+Q +Y  S +E+    H+ LR
Sbjct: 3725 PGMLHVSVVNINDNSPVFSQKMYSASIDENTTVGHVILR 3763



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 42   PSILTATLFNINIISTVFNQGLYVISPNEHR*CKHLFLR 158
            P +L  ++ NIN  S VF+Q +Y  S +E+    H+ LR
Sbjct: 4162 PGMLHVSVVNINDNSPVFSQKIYSASIDENTTVGHVILR 4200



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 42   PSILTATLFNINIISTVFNQGLYVISPNEHR*CKHLFLR 158
            P +L  ++ NIN  S VF+Q +Y  S +E+    H+ LR
Sbjct: 4599 PGMLHVSVVNINDNSPVFSQKIYSASIDENTTVGHVILR 4637



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 42   PSILTATLFNINIISTVFNQGLYVISPNEHR*CKHLFLR 158
            P +L  ++ NIN  S VF+Q +Y  S +E+    H+ LR
Sbjct: 5036 PGMLHVSVVNINDNSPVFSQKIYSASIDENTTVGHVILR 5074


>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = -2

Query: 285 FYLYPLHAVGKFTT-----FVLIKEKQSVV---RLVRRAITLMCVRLGPHVSKRGACI 136
           F +YP H  GK         V + + QS+V   RL    ++L C  + P  +++G+C+
Sbjct: 302 FPVYPHHLPGKMVETDNEWLVSVDKGQSIVIKGRLNEEFVSLQCTSIEPSNTRKGSCV 359


>SB_20389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -1

Query: 175 EARTSCLKKRCLHYLCSF---GEMT*RP*LKTVEIMLILNRVAVRILGQNRARDKHDC 11
           E RTS   K CL YLCSF     +T RP       + +L+R  +R+  +  +  +  C
Sbjct: 6   ELRTS---KHCLGYLCSFPARSSVTNRPTASGQRCLWLLSRFKIRLAARENSLARMFC 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,167,335
Number of Sequences: 59808
Number of extensions: 349710
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)