SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1136
         (667 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.      26   1.2  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    25   2.1  

>AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 306 FNKIPLY--WSKINMFFFFHLCFIKALVYNVLHIFFV 410
           FN IPL    +++   FF+ +CF++ +  + L+  FV
Sbjct: 369 FNYIPLQEGTTRLRYTFFYAVCFVETVAASALYGTFV 405


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 307 NFP*KLRFLFISITRRREIYHFCINKRKAIRGPASQKSYYFNVCEARTSCLKKR 146
           +F  ++ FL    TRR + +  C+ KR+ +      K     V E   SC KK+
Sbjct: 276 SFADRMTFLSSKFTRRVDKFEKCVVKRRQL-----MKQNEREVVEKSKSCFKKQ 324


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,878
Number of Sequences: 2352
Number of extensions: 11999
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -