Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1136
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    31   0.56 
U58763-2|AAK68876.1|  673|Caenorhabditis elegans Metaphase-to-an...    29   2.2  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   9.1  

>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 268 TRRREIYHFCINKRKAIRGPASQKSYYFNVCEARTSCLKKRCLH 137
           +RR ++Y  C+ +   ++ P  +  Y   +C+ R    K  C+H
Sbjct: 332 SRRDKLYDHCLRRTILMKNPEMEDPYLCKLCQKRFGTEKALCMH 375


>U58763-2|AAK68876.1|  673|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 3
           protein.
          Length = 673

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 547 RSFFLALRWVDELTAHLGIKW-LPELIDIYN 636
           R F  A  W +E+ AHL  KW  P  +++YN
Sbjct: 81  RCFLDAEMWTNEILAHLPDKWCAPNTLNLYN 111


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 339 NMFFFFHLCFIKALVYNVLHIFFV 410
           +MFFFF  C    L +N  HIF V
Sbjct: 267 SMFFFFFSCVSAPLSFNSAHIFLV 290


>Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 562 LKKKNVLQSIQRIRSRLRFSGSPAENGNQKKKRVSTVTY 446
           L+K++   S+QRI+S   F+ S  E    +K+R +  T+
Sbjct: 39  LRKRSSTSSLQRIQSEFTFTDSATEERCSRKRRRTQQTH 77


>Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 562 LKKKNVLQSIQRIRSRLRFSGSPAENGNQKKKRVSTVTY 446
           L+K++   S+QRI+S   F+ S  E    +K+R +  T+
Sbjct: 39  LRKRSSTSSLQRIQSEFTFTDSATEERCSRKRRRTQQTH 77


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
            homolog protein 1 protein.
          Length = 1722

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 202  QKSYYFNVCEARTSCLKKRCLHYLC 128
            QK +    CE   SCLK +C+H  C
Sbjct: 1433 QKFFMGTRCEIEGSCLKAQCVHGEC 1457


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,936
Number of Sequences: 27780
Number of extensions: 289448
Number of successful extensions: 637
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)