Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1136
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   8.0  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 208 ASQKSYYFNVCEARTSCLKKRCLHY 134
           AS   YY N  + RTS  ++  +HY
Sbjct: 271 ASTSLYYVNTEQFRTSDYQQNDIHY 295


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 208 ASQKSYYFNVCEARTSCLKKRCLHY 134
           AS   YY N  + RTS  ++  +HY
Sbjct: 271 ASTSLYYVNTEQFRTSDYQQNDIHY 295


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 208 ASQKSYYFNVCEARTSCLKKRCLHY 134
           AS   YY N  + RTS  ++  +HY
Sbjct: 271 ASTSLYYVNTEQFRTSDYQQNDIHY 295


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 529 RIRSRLRFSGSPAENGNQKKKRVSTVTYLFIYLFSFYKNQTKKM 398
           R  S+ RF        +++ K +S+++   I+  + YKN  KK+
Sbjct: 293 RETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKL 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,269
Number of Sequences: 438
Number of extensions: 3605
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)