Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1135
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VLG1 Cluster: CG13101-PA, isoform A; n=2; Sophophora|...    36   0.77 
UniRef50_Q54Z86 Cluster: Putative uncharacterized protein; n=2; ...    35   1.4  
UniRef50_A5B2F3 Cluster: Cation-transporting ATPase; n=6; core e...    33   7.2  
UniRef50_Q234F9 Cluster: Hypothetical repeat containing protein;...    32   9.5  

>UniRef50_Q9VLG1 Cluster: CG13101-PA, isoform A; n=2;
           Sophophora|Rep: CG13101-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 318

 Score = 35.9 bits (79), Expect = 0.77
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 395 ILNILGPSLISILHYRSHFQLKIPSNYNFKSWFSLDWTGHAFPFDVAIVIPI 550
           + N+LG  L++I HY   +  K+ +  ++ S+F L W  H     ++IVI I
Sbjct: 93  LTNVLGAILVTIWHYHPEYADKLLNMKSYFSYFRLYWGMHIISLVLSIVITI 144


>UniRef50_Q54Z86 Cluster: Putative uncharacterized protein; n=2;
            Dictyostelium discoideum|Rep: Putative uncharacterized
            protein - Dictyostelium discoideum AX4
          Length = 1376

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 392  NILNILGPSLISILHYRS-HFQLKIPSNYNFKSWFSLDWTGHAFPFDVAIVIPITTSTSR 568
            N  NIL  SL+SI+  R  +FQ  + + + F+ W   +   +   +  +I +P TT  S 
Sbjct: 1089 NSTNILFKSLVSIVSLRELNFQGNVVNEFKFEKWIYSEINSNKHQYFTSINVPSTTLNSN 1148

Query: 569  RVDPR*LSPVHQW 607
                  +    QW
Sbjct: 1149 ETTSTNIMATIQW 1161


>UniRef50_A5B2F3 Cluster: Cation-transporting ATPase; n=6; core
           eudicotyledons|Rep: Cation-transporting ATPase - Vitis
           vinifera (Grape)
          Length = 1258

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 461 IPSNYNFKSWFSLDWTGHAFPFDVAIVI 544
           +P  Y F SW+ L WT    PF++ +++
Sbjct: 336 VPVEYRFPSWWHLLWTAFFHPFNIILIV 363


>UniRef50_Q234F9 Cluster: Hypothetical repeat containing protein;
           n=3; Tetrahymena thermophila SB210|Rep: Hypothetical
           repeat containing protein - Tetrahymena thermophila
           SB210
          Length = 3748

 Score = 32.3 bits (70), Expect = 9.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 349 LH*WTLLTRHSVTLKYFKYFRAFINLNTTLQIT 447
           L+ WTL T   + L YF Y +  +NL  T+Q+T
Sbjct: 368 LYYWTLYTSSQINLLYFNYGQMSLNLLQTIQMT 400



 Score = 32.3 bits (70), Expect = 9.5
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 331  LELKSRLH*WTLLTRHSVTLKYFKYFRAFINLNTTLQIT 447
            ++L S L+ WTL T   + L YF Y +  +NL  T+Q+T
Sbjct: 3255 IQLNS-LYYWTLYTSTQINLLYFNYGQMTLNLLQTIQMT 3292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,671,737
Number of Sequences: 1657284
Number of extensions: 8444327
Number of successful extensions: 15436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15342
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)