Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1135
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   1.6  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   6.6  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   6.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   6.6  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   6.6  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   6.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.8  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    25   8.8  

>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 521 GTHDLSNLMRTNF*SYSLTVF*VENVICNVVLRLMKA 411
           GTH L +LM TNF  +      ++NV   ++  L  A
Sbjct: 138 GTHQLLSLMETNFNKFIAAKETIDNVYAQIISTLSHA 174


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 404 ILGPSLISILHYRSHFQLKIPSNYNFKSWFSLDWTGHAFP 523
           IL   LIS  ++ + F +    NY F+  F++ W    FP
Sbjct: 277 ILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFP 316


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 404 ILGPSLISILHYRSHFQLKIPSNYNFKSWFSLDWTGHAFP 523
           IL   LIS  ++ + F +    NY F+  F++ W    FP
Sbjct: 277 ILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFP 316


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 97  SNFFIFFVFICNKQAWS 47
           +NFF+ F F+CN  ++S
Sbjct: 613 ANFFLAFYFVCNATSYS 629


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 404 ILGPSLISILHYRSHFQLKIPSNYNFKSWFSLDWTGHAFP 523
           IL   LIS  ++ + F +    NY F+  F++ W    FP
Sbjct: 277 ILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFP 316


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 404 ILGPSLISILHYRSHFQLKIPSNYNFKSWFSLDWTGHAFP 523
           IL   LIS  ++ + F +    NY F+  F++ W    FP
Sbjct: 277 ILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFP 316


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 51  HACLLQIN-TKKIKKLLYSRYK*IKCPSLNFQMFKTVV 161
           + C+L I  T+KI KLL+S +K +    LN  +F  +V
Sbjct: 620 YRCILLIPYTRKIAKLLFSNFKQL----LNLMLFLVIV 653


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 FVHVISFFYNKCYITLAGYDVI 229
           ++HVI F Y  C+I   G +VI
Sbjct: 196 YLHVIWFLYYACWILSEGLNVI 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,744
Number of Sequences: 5004
Number of extensions: 39384
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)