Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1135
         (617 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069364-1|AAL39509.1|  318|Drosophila melanogaster LD06593p pro...    36   0.044
AE014134-1588|AAN10684.1|  318|Drosophila melanogaster CG13101-P...    36   0.044
AE014134-1587|AAF52731.1|  318|Drosophila melanogaster CG13101-P...    36   0.044

>AY069364-1|AAL39509.1|  318|Drosophila melanogaster LD06593p
           protein.
          Length = 318

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 395 ILNILGPSLISILHYRSHFQLKIPSNYNFKSWFSLDWTGHAFPFDVAIVIPI 550
           + N+LG  L++I HY   +  K+ +  ++ S+F L W  H     ++IVI I
Sbjct: 93  LTNVLGAILVTIWHYHPEYADKLLNMKSYFSYFRLYWGMHIISLVLSIVITI 144


>AE014134-1588|AAN10684.1|  318|Drosophila melanogaster CG13101-PB,
           isoform B protein.
          Length = 318

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 395 ILNILGPSLISILHYRSHFQLKIPSNYNFKSWFSLDWTGHAFPFDVAIVIPI 550
           + N+LG  L++I HY   +  K+ +  ++ S+F L W  H     ++IVI I
Sbjct: 93  LTNVLGAILVTIWHYHPEYADKLLNMKSYFSYFRLYWGMHIISLVLSIVITI 144


>AE014134-1587|AAF52731.1|  318|Drosophila melanogaster CG13101-PA,
           isoform A protein.
          Length = 318

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 395 ILNILGPSLISILHYRSHFQLKIPSNYNFKSWFSLDWTGHAFPFDVAIVIPI 550
           + N+LG  L++I HY   +  K+ +  ++ S+F L W  H     ++IVI I
Sbjct: 93  LTNVLGAILVTIWHYHPEYADKLLNMKSYFSYFRLYWGMHIISLVLSIVITI 144


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,287,174
Number of Sequences: 53049
Number of extensions: 380255
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)