Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1135
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 / ...    28   5.7  
At1g79915.1 68414.m09337 hypothetical protein                          27   10.0 

>At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 /
           trehalase, putative similar to trehalase 1 GMTRE1
           GI:4559292 from [Glycine max]
          Length = 626

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 136 FRLGHFIYL*RE*SNFFIFFVFIC 65
           F    FIYL ++ S FF FF F+C
Sbjct: 32  FSFPSFIYLKQQRSLFFFFFFFLC 55


>At1g79915.1 68414.m09337 hypothetical protein
          Length = 164

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 6   QFQRPVKKSRINHTDHAC-LLQINTKKIKKLLYSRYK*IKCPS 131
           +F  P      NHT+H C L+ + ++ I    YS +  IK PS
Sbjct: 14  RFDFPSLMHESNHTNHVCYLILLASRPIVYCHYSAFYHIKSPS 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,811,479
Number of Sequences: 28952
Number of extensions: 182868
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)