Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1134
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    60   3e-10
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    28   0.81 
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    27   1.9  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   2.5  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   3.3  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.3  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   4.3  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    26   4.3  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   4.3  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    25   7.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.5  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   7.5  

>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 32/85 (37%), Positives = 47/85 (55%)
 Frame = +2

Query: 254 HDAIMAEEKHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYA 433
           +DA++A E  M +Y E    Y+A    GG+ QNS R AQ++L  PN   + GCVG D++A
Sbjct: 33  NDAVLASESQMGIYKEPCVSYSA----GGAAQNSCRAAQYVLP-PNSTVFAGCVGQDKFA 87

Query: 434 KLLKERAIADGVHVQYQVSNEVATG 508
            +L E     G+  ++ V     TG
Sbjct: 88  DMLLESNEKAGLRSEFSVDPTTPTG 112


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 347 QNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAIADGVHV 475
           +N+L    +I+KK  +  Y GC G + Y+     R +  G  +
Sbjct: 187 RNALTPLDFIMKKNELMKYIGCFGVEAYSTASGTRTLQAGERI 229


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 319 CRVYCWWKRSEFIKSSTMDSKETKYLYLLWLC 414
           CRVYC+  R+  +K    D          W+C
Sbjct: 44  CRVYCYLSRNGLLKRPKEDDSSANAQVKNWVC 75


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 319 CRVYCWWKRSEFIKSSTMDSKET 387
           C++Y W   S+ +++ST+ SKET
Sbjct: 175 CKIYDWVAGSKNLRASTIFSKET 197


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 159 HIWNQKRPLCNTSYVVVNRTKNKMFSRVY 73
           H W +   L  TSYV +N+ + + FS+ +
Sbjct: 620 HDWKRVDRLMMTSYVSLNQAQRRWFSKAF 648


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 244 SYFFSKSSSTLADMSNKGFPMPTNNPSWSHMESETS 137
           SYF + SSST +  S+     P+++ S S   S++S
Sbjct: 144 SYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSS 179


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 329  IAGGSVQNSLRVAQWILKKPNICTYF-GCVGN 421
            + GG+V  S R+   ILK  +IC    GC+ N
Sbjct: 1067 VVGGNVLTSQRITDVILKAFSICAASQGCMNN 1098


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 217 TLADMSNKGFPMPTNNP-SWSHMESETSIM*Y 125
           T A + N+GFPMPT +   +S+ +S    M Y
Sbjct: 221 TQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQY 252


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +3

Query: 192 PLLDISASVDEDLLKKYDLHPTMPL-----WLKKNTCHSTRNSLTSIMQSILLVEAF 347
           P  D+SA +    L KY+ H    L     W  +++C S      S+MQ +  + AF
Sbjct: 134 PFTDVSAHLSSSSLSKYNHHSNHRLASPGWWYGEDSCISQSLDPRSVMQ-VQTIRAF 189


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 120 NLYYIMDVSDSICDQEGLLVGIGNPLLDISASVDEDLL-KKYDLHPTMPLWLKKNTCHST 296
           +L  I D ++ IC + G+L  +G   L + A V  D + ++ D+ P     ++  TC ST
Sbjct: 169 SLPVISDSNNEICREMGMLHPLGGAKLALDAIVIIDSIGRRRDILP-----IRTTTCVST 223

Query: 297 RNSLTSIMQSI 329
              +T++ +++
Sbjct: 224 --LITAVQETV 232


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 287  PLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKE 448
            P+ + L D  +     GGS + S+   + +    +   Y GC+ +D+  +LL E
Sbjct: 1579 PMLARLSDSKSVHGEEGGSGKRSVSSLRNVSPSESTGGYEGCIFDDQQYQLLYE 1632


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 150 NQKRPLCNTSYVVVNRTKNKMFSRVYRTRMS 58
           ++KR LC    V +N   + +F++ +RT +S
Sbjct: 194 SEKRYLCPPPMVYINGNYSSIFNQSFRTEIS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,325
Number of Sequences: 5004
Number of extensions: 51786
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)