Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1134
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0012 - 24959542-24959684,24960132-24960192,24960995-249611...    99   3e-21
04_04_0520 - 25871932-25872074,25872234-25872294,25873267-258733...    97   8e-21
04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800     28   5.8  
01_06_0299 + 28305447-28305729,28305892-28306104,28306915-283070...    28   5.8  
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623...    27   7.7  

>02_05_0012 -
           24959542-24959684,24960132-24960192,24960995-24961117,
           24961196-24961262,24961510-24961580,24961650-24961747,
           24962279-24962355,24963568-24963635,24963754-24963855,
           24963945-24963976,24964066-24964112,24964263-24964316,
           24964952-24965034
          Length = 341

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 42/85 (49%), Positives = 58/85 (68%)
 Frame = +2

Query: 254 HDAIMAEEKHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYA 433
           ++AI+AEEKH+P+Y EL  K N EYIAGG+ QNS+RVAQW+L+ P   +Y GC+G D++ 
Sbjct: 34  NNAILAEEKHLPMYDELASKGNVEYIAGGATQNSIRVAQWMLQTPGATSYMGCIGKDKFG 93

Query: 434 KLLKERAIADGVHVQYQVSNEVATG 508
           + +K+ A A GV   Y       TG
Sbjct: 94  EEMKKNAQAAGVTAHYYEDEAAPTG 118



 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = +3

Query: 165 EGLLVGIGNPLLDISASVDEDLLKKYDL 248
           EG+L+G+GNPLLDISA VD+  L KYD+
Sbjct: 4   EGVLLGMGNPLLDISAVVDDAFLTKYDV 31


>04_04_0520 -
           25871932-25872074,25872234-25872294,25873267-25873389,
           25873465-25873531,25873710-25873780,25873853-25874004,
           25874082-25874158,25874323-25874435,25874503-25874598,
           25874703-25874734,25874838-25874884,25875015-25875068,
           25875212-25875289,25875607-25875698
          Length = 401

 Score = 97.1 bits (231), Expect = 8e-21
 Identities = 40/74 (54%), Positives = 56/74 (75%)
 Frame = +2

Query: 251 PHDAIMAEEKHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEY 430
           P +AI+AEEKH+P+Y+EL  K N EYIAGGS QNS+RVAQW+L+ P   +Y GC+G D++
Sbjct: 62  PGNAILAEEKHLPMYNELASKVNVEYIAGGSTQNSIRVAQWMLQIPGATSYMGCIGKDKF 121

Query: 431 AKLLKERAIADGVH 472
            + +K+ A   G+H
Sbjct: 122 GEEMKKDAQTAGLH 135



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +3

Query: 165 EGLLVGIGNPLLDISASVDEDLL 233
           EG+L+G+GNPLLDISA VDE  L
Sbjct: 7   EGVLLGMGNPLLDISAVVDEAFL 29


>04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800
          Length = 389

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +3

Query: 192 PLLDISASVDEDLLKKYDLHPTMPLWL----KKNTCHSTRNS 305
           PL+DISA    D+   +  HP + +W      +  CH  R+S
Sbjct: 335 PLVDISARHGFDIDAVFAAHPRLAIWYVPTRLRQLCHQARSS 376


>01_06_0299 +
           28305447-28305729,28305892-28306104,28306915-28307043,
           28307677-28307857,28308329-28308425,28309157-28309260,
           28309734-28309785,28310040-28310252
          Length = 423

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 42  LRGFILTFECGKLVKTFYF 98
           L+G++++  CG  V+TFYF
Sbjct: 97  LQGYVVSCSCGVAVRTFYF 115


>01_06_1330 -
           36361275-36361448,36361778-36361973,36362248-36362325,
           36362685-36362807,36363206-36363463,36363914-36364073,
           36364702-36364812,36365159-36365429,36365514-36365663,
           36366383-36367090
          Length = 742

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 39  ILRGFILTFECGKLVKTFYFWYDLRPHNLYYIMDVSDSICDQEGLLVGIGNPLLDISASV 218
           +LR   L F C       Y W D  P  L++    S S       L+  G+P + +S + 
Sbjct: 17  VLRAAALAFACAAAFLVGYHWSDSSPRLLFFSSTASSS----SSPLLSTGSPSVAVSPNA 72

Query: 219 D 221
           +
Sbjct: 73  N 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,119
Number of Sequences: 37544
Number of extensions: 313663
Number of successful extensions: 751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)