Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1134
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_34901| Best HMM Match : 7tm_1 (HMM E-Value=1.40004e-41) 29 1.9
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24) 29 1.9
SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16) 29 2.6
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 28 4.5
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 5.1
SB_25152| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_10543| Best HMM Match : Ank (HMM E-Value=0.0069) 28 5.9
SB_47972| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=1.7e-08) 27 7.9
SB_47864| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 800
Score = 41.9 bits (94), Expect = 3e-04
Identities = 14/26 (53%), Positives = 22/26 (84%)
Frame = +2
Query: 293 YSELVDKYNAEYIAGGSVQNSLRVAQ 370
Y E++DK+N +Y+ GG+ QNS+R+AQ
Sbjct: 44 YQEMIDKFNVDYLPGGATQNSIRIAQ 69
Score = 35.1 bits (77), Expect = 0.039
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 413 VGNDEYAKLLKERAIADGVHVQYQVSNEVATG 508
+G D + K L + A A GVHV Y ++ E+ TG
Sbjct: 521 IGEDAFGKTLTDIATAAGVHVNYLINKEIPTG 552
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 508 SCAVLVTGTHRSLCANL 558
+CAV +TG HRSL ANL
Sbjct: 553 TCAVCITGKHRSLVANL 569
>SB_34901| Best HMM Match : 7tm_1 (HMM E-Value=1.40004e-41)
Length = 686
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 54 ILTFECGKLVKTFYFWYDLRPHNLYYIMDVSDSICDQEGLLVGIGNPLLDISASVD 221
IL +C + + F RPH Y D ++S C + G L +P I+ +++
Sbjct: 239 ILLTQCFRYILFVLFLIGKRPHLKGYSYDFTESYCSERGRLTPSCDPPYKINITIE 294
>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
Length = 428
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 48 GFILTFECGKLVKTFYFWYDLRPHNLYYIMDVSDSICDQEGLLVG 182
G+I +C + + F RPH Y D ++S C++ G +G
Sbjct: 362 GWISLTQCVRYILFVLFLIGNRPHLQGYFYDFTESYCNERGRRIG 406
>SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16)
Length = 879
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 135 MDVSDSICDQEGLLVGIGNPLLDISASVDEDLLK 236
M+VSDSI D L+ G+G PLLD+ ++ D ++
Sbjct: 317 MNVSDSILD--ALVKGLGQPLLDLINYLEGDHMR 348
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 224 GLAEEV*PAPHDAIMAEEKHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPN 391
G+A + PA A + + + E+V+KY G+VQN L+V++ KP+
Sbjct: 1251 GVANMLEPAKKPAHITSDDDL---MEIVNKYVGSAATSGTVQNDLKVSESASYKPS 1303
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 24.6 bits (51), Expect(2) = 5.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 195 LLDISASVDEDLLKKYDLHPTMPLWLKKNTCHST 296
L D S+SV L+ Y + P WL KN+ +T
Sbjct: 390 LHDSSSSVHSVLVVGYGVEDGEPYWLVKNSWSTT 423
Score = 21.8 bits (44), Expect(2) = 5.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 273 KKNTCHSTRNSLTSIMQ 323
K+NTC TRN + ++++
Sbjct: 435 KRNTCGVTRNPVVALIK 451
>SB_25152| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 66 ECGKLVKTFYFWYDLRPHNLYYIMDVSDSICDQEGLLVGIGNPLLDISASVD 221
+C + + F RPH Y D ++S C + G L +P I+ +++
Sbjct: 7 QCVRYILFVLFLIGKRPHLKGYSYDFTESYCSERGRLTPSWDPPYKINITIE 58
>SB_10543| Best HMM Match : Ank (HMM E-Value=0.0069)
Length = 171
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 401 YFGCVGNDEYAKLLKERAIADGVHVQYQVSNEVATGHVQC**LVHTAHC 547
+ G G E AK+L A+ +H+ + ++VAT + H A+C
Sbjct: 45 FAGKAGKTEVAKVLLRSGAAESIHIGESIISDVATSRKE----FHHAYC 89
>SB_47972| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=1.7e-08)
Length = 224
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Frame = +3
Query: 135 MDVSDS---ICDQEGLLVGIGNP------LLDISASVDEDLLKKYDLHPTMPLWLKKNTC 287
MD++D + EG VG P L S+ DL+++ HP++ +W N
Sbjct: 120 MDLADRLGIVIIDEGSAVGFSKPEYFNDKSLSQHLSMITDLIRRDKNHPSVVMWSVANEP 179
Query: 288 HSTRNSLTSIMQSIL 332
H+ ++ + ++S++
Sbjct: 180 HTDTDTAAAYLRSVI 194
>SB_47864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 285 CHSTRNSLTSIMQSILLVEAFRIH 356
CH+T L SI +SI L AFR H
Sbjct: 49 CHATLFPLMSITRSIKLCHAFRSH 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,000
Number of Sequences: 59808
Number of extensions: 371607
Number of successful extensions: 907
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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