Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1134
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.4  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 338 HQQYTLHYTCQRVPSRVACVFLQP*WH 258
           HQQ    Y C+R+ +R+  V     WH
Sbjct: 238 HQQIMARYNCERLCNRLGRVKRFINWH 264


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 285 CHSTRNSLTSIMQSILLVEAFRIH*E 362
           C S++NS  SIMQ   + E   ++ E
Sbjct: 623 CQSSKNSENSIMQRASMKENLNVYPE 648


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 252 PTMPLWLKKNTCHSTRNS 305
           P+MPL  +  +CH+T +S
Sbjct: 649 PSMPLLPRPISCHTTPDS 666


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 186 LCPLIILLGHIWNQKRPLCNTSYVVVNRTKNKMFSRVYRTRMSR*NHVI 40
           L  L + LG+  +   P+    Y  +NR   K F  +   R S  NH++
Sbjct: 408 LSSLFLWLGYCNSLLNPII---YATLNRDFRKPFREILYFRCSNLNHMM 453


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 118 ITCIT*WTFLIPYV 159
           +TCI  W ++IP +
Sbjct: 221 VTCIFIWAYVIPLI 234


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 118 ITCIT*WTFLIPYV 159
           +TCI  W ++IP +
Sbjct: 221 VTCIFIWAYVIPLI 234


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +2

Query: 374 ILKKPNICTYFGCVGNDEYAKLLKERAIA 460
           ++K   +   + C  ND Y  ++ E +I+
Sbjct: 221 VIKATKVLKMYACCPNDTYPMIVYEFSIS 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,177
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)