Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1134
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09820.1 68416.m01170 adenosine kinase 1 (ADK1) / adenosine 5...    98   3e-21
At5g03300.1 68418.m00281 adenosine kinase 2 (ADK2) contains Pfam...    98   4e-21
At3g09820.2 68416.m01171 adenosine kinase 1 (ADK1) / adenosine 5...    79   2e-15
At1g33410.1 68414.m04136 expressed protein                             28   3.7  
At1g61030.1 68414.m06871 expressed protein                             27   6.4  
At1g03160.1 68414.m00293 GTP-binding protein-related contains TI...    27   6.4  
At5g36060.1 68418.m04344 hypothetical protein                          27   8.5  

>At3g09820.1 68416.m01170 adenosine kinase 1 (ADK1) / adenosine
           5'-phosphotransferase 1 identical to adenosine kinase 1
           /adenosine 5'-phosphotransferase 1 SP:Q9SF85 from
           [Arabidopsis thaliana]
          Length = 344

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 40/85 (47%), Positives = 60/85 (70%)
 Frame = +2

Query: 254 HDAIMAEEKHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYA 433
           ++AI+AE+KH+P+Y E+  K+N EYIAGG+ QNS++VAQW+L+ P   +Y G +G D+Y 
Sbjct: 37  NNAILAEDKHLPMYDEMSQKFNVEYIAGGATQNSIKVAQWMLQVPGATSYMGSIGKDKYG 96

Query: 434 KLLKERAIADGVHVQYQVSNEVATG 508
           + +K+ A A GV+V Y       TG
Sbjct: 97  EAMKKDATAAGVYVHYYEDEATPTG 121



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 18/30 (60%), Positives = 25/30 (83%)
 Frame = +3

Query: 159 DQEGLLVGIGNPLLDISASVDEDLLKKYDL 248
           D +G+L+G+GNPLLD+SA VD+  L KYD+
Sbjct: 5   DFDGILLGMGNPLLDVSAVVDQQFLDKYDI 34


>At5g03300.1 68418.m00281 adenosine kinase 2 (ADK2) contains Pfam
           profile: PF00294 pfkB family carbohydrate kinase;
           identical to cDNA adenosine kinase 2 (ADK2) GI:12017763
          Length = 345

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 40/85 (47%), Positives = 60/85 (70%)
 Frame = +2

Query: 254 HDAIMAEEKHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYA 433
           ++AI+AE+KH+P+Y E+  K+N EYIAGG+ QNS++VAQW+L+ P   +Y G +G D+Y 
Sbjct: 38  NNAILAEDKHLPMYDEMSSKFNVEYIAGGATQNSIKVAQWMLQIPGATSYMGSIGKDKYG 97

Query: 434 KLLKERAIADGVHVQYQVSNEVATG 508
           + +K+ A A GV+V Y       TG
Sbjct: 98  EAMKKDATAAGVNVHYYEDESAPTG 122



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +3

Query: 150 SICDQEGLLVGIGNPLLDISASVDEDLLKKYDL 248
           S  + +G+L+G+GNPLLDISA VD++ L KYD+
Sbjct: 3   SSSNYDGILLGMGNPLLDISAVVDDEFLTKYDI 35


>At3g09820.2 68416.m01171 adenosine kinase 1 (ADK1) / adenosine
           5'-phosphotransferase 1 identical to adenosine kinase 1
           /adenosine 5'-phosphotransferase 1 SP:Q9SF85 from
           [Arabidopsis thaliana]
          Length = 302

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 33/72 (45%), Positives = 47/72 (65%)
 Frame = +2

Query: 293 YSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAIADGVH 472
           Y E+  K+N EYIAGG+ QNS++VAQW+L+ P   +Y G +G D+Y + +K+ A A GV+
Sbjct: 8   YDEMSQKFNVEYIAGGATQNSIKVAQWMLQVPGATSYMGSIGKDKYGEAMKKDATAAGVY 67

Query: 473 VQYQVSNEVATG 508
           V Y       TG
Sbjct: 68  VHYYEDEATPTG 79


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 51  FILTFECGKLVKTFYFWYDLRPHNLYYIMDVSDSICDQEGLLVGIGNPL-LDISASVDE 224
           F+   E G   +  YF Y L P  + Y++ +S+++  + G +  + + + LD+   ++E
Sbjct: 113 FVYADEGGDSGRLVYFLYSLTPSGVVYVLKLSNTLAYKSGSVFPLDHLIHLDVRPYLNE 171


>At1g61030.1 68414.m06871 expressed protein 
          Length = 840

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 256 VGCRSYFFSKSSSTLADMSNKGFPMPTNNPSWSHMESET 140
           VGCR         ++A++    FP  T +P +S MES T
Sbjct: 632 VGCREVAACGGLESMAELVVGHFPSFTRSPLYSQMESGT 670


>At1g03160.1 68414.m00293 GTP-binding protein-related contains
           TIGRFAM TIGR00650: GTP-binding conserved hypothetical
           protein domain; contains TIGRFAM TIGR00231: small
           GTP-binding protein domain; similar to  mitofusin 1
           precursor (GI:12744896) [Homo sapiens]
          Length = 642

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 320 AEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDE 427
           A+++  GS +   +VA  +LK   I  Y  C GN+E
Sbjct: 206 ADFLILGSGEEDTQVADSLLKSVKIPIYVTCRGNEE 241


>At5g36060.1 68418.m04344 hypothetical protein
          Length = 165

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 60  TFECGKLVKTFYFWYDLRPHNLYY 131
           T  C +L +++YF +   PH++YY
Sbjct: 58  TLSCVRLDRSWYFMWWSMPHSIYY 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,464,426
Number of Sequences: 28952
Number of extensions: 260960
Number of successful extensions: 629
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)