Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1133
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   6.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.5  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 87  VENSDKKNEKAPILLNL 137
           VE SDK+    P LLN+
Sbjct: 368 VEESDKQRTHQPFLLNI 384


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 266 DRRHYRRRDVTTTHLTANNAENRLLYIPLLQAERAWA 376
           DRR+    D    +  +N A +  + + L    RAWA
Sbjct: 269 DRRNDENIDAQVKYWMSNGAPSAKIVLGLPTFGRAWA 305


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 122 HPPQLRNISDNKRQSAAAWSPTC*LSEI 205
           +PP  + ++D+   S A  +PT  ++E+
Sbjct: 295 YPPLAQGVNDDAFNSVATPTPTSVMTEL 322


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = -1

Query: 243 FAVFLCGANNSHDISDNQHVGDHAAADCLLLS 148
           +  + CG    + I D+ +  +HA    L+ S
Sbjct: 295 YDAYYCGGECEYPIPDHMNTTNHAIVQSLVNS 326


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 51  QESEIENGKVTAVENSDK-KNEKAPIL 128
           ++ + ++ +  +VE S K KN+ APIL
Sbjct: 125 RQQQKQHNQQQSVEKSSKLKNKSAPIL 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,764
Number of Sequences: 336
Number of extensions: 2924
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)