Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1133
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    30   0.24 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.3  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.9  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   6.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   6.9  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.1  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 445 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGL 356
           +SRH+  L     + F  ++HGM PC  GL
Sbjct: 46  ESRHESDLIKSILLPFHNRIHGMLPCKQGL 75


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 57   SEIENGKVTAVENSDKKNE-KAPILLNLEIFRITRDSQQQHGLRHAD 194
            +E+ + +    ++ +K+N+ K  +LL  E  R TR+  ++  LRHAD
Sbjct: 1025 NELSSHRNAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHAD 1071


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -2

Query: 572 NSSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHVHMLSSVETQDETFFSVQ 408
           NSS  +     AY P SST           A+  S+H    S +   D T FS +
Sbjct: 202 NSSETSSNRTSAYLPGSSTDEQEKRSSVTLASMPSSHSSTASLLSPLDTTSFSTK 256


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = -2

Query: 632 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHVHM 453
           S SST+ +  + S+++    +SSS+ P S  +++ + S+ +  +      A  +SA  H 
Sbjct: 367 SFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHN 426

Query: 452 LSS 444
            +S
Sbjct: 427 STS 429


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +2

Query: 548 CGACCCWSCNNG-ARQRTHC 604
           CG   CWSC NG   +++ C
Sbjct: 271 CGHIFCWSCINGWTSKKSEC 290


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
 Frame = +2

Query: 254  IPQGDRRHYRRRDVTTTH----LTANNAE---NRLLYI-----PLLQAERAWAHAMQLRQ 397
            IPQ D R  ++ D   TH    +T N      N   YI       + ++R WA     RQ
Sbjct: 1359 IPQSDLRWSKQTDTGITHFRSGMTTNGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQ 1418

Query: 398  EANTEPRK 421
            EA  + R+
Sbjct: 1419 EALQQNRR 1426


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = -2

Query: 632 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHVHM 453
           S SS+  +  + S++S    +SSS++  S  + + +SS+    +   P  ++ +S+H   
Sbjct: 162 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSS 221

Query: 452 LSS 444
            SS
Sbjct: 222 SSS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,067
Number of Sequences: 5004
Number of extensions: 45809
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)