Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1133
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018... 37 0.012
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 33 0.14
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 31 1.0
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 31 1.0
09_06_0043 + 20448793-20449823,20449915-20450030,20450491-204506... 29 3.1
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 29 4.1
02_05_0433 - 28939817-28940146 29 4.1
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 28 5.4
08_01_0212 - 1680199-1680240,1680661-1680723,1681620-1681729,168... 28 7.1
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724... 27 9.4
>08_02_0195 -
14098865-14099083,14100209-14100352,14101820-14101833,
14101919-14102006,14102303-14102426,14102959-14103068,
14103142-14103348,14103441-14103568,14103781-14103892,
14105678-14105695,14105917-14106109,14106274-14106359,
14106494-14106582,14106817-14106863,14107424-14107534,
14110252-14110318,14110419-14110509
Length = 615
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 463 WADAFAAL*GKRQVRTRTVLEAGAYASWLRGVLLLELQQWREAA-DSLQRARIVLEQL 633
WA F+ L + +RT LEA AYAS+++G LL E ++ EAA + + R V E+L
Sbjct: 114 WATLFSHLCSLKG-DSRTSLEAEAYASYMKGTLLFEQEKNIEAAMTNFKNTRAVYEEL 170
Score = 34.7 bits (76), Expect = 0.062
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 111 EKAPILLNLEIFRITRDSQQQHGLRHADY 197
EK + ++ + + R++Q QHGLRH DY
Sbjct: 21 EKPLVRFSINVLELMREAQMQHGLRHGDY 49
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -2
Query: 632 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHVHM 453
+CS+ + + A+SRH +SSS++ P+ S RV PH A A + M
Sbjct: 32 ACSTPRRGKTSPHASSRHASSSSSSSS------LPSCSAARVAVTPAPHATATAPVTMRM 85
Query: 452 LS-SVETQDETF 420
S SV Q E+F
Sbjct: 86 RSLSVSFQGESF 97
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Frame = +2
Query: 254 IPQGDRRHYRRRDVTTTHLTA--NNAENRLL-----YI-----PLLQAERAWAHAMQLRQ 397
IPQ D R+ ++ DV TH + ++ E++L+ YI + ++R WA RQ
Sbjct: 1350 IPQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQ 1409
Query: 398 EANTEPRK 421
EA ++ R+
Sbjct: 1410 EAQSQNRR 1417
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Frame = +2
Query: 254 IPQGDRRHYRRRDVTTTHLTA--NNAENRLL-----YI-----PLLQAERAWAHAMQLRQ 397
IPQ D R+ ++ DV TH + ++ E++L+ YI + ++R WA RQ
Sbjct: 1350 IPQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQ 1409
Query: 398 EANTEPRK 421
EA ++ R+
Sbjct: 1410 EAQSQNRR 1417
>09_06_0043 +
20448793-20449823,20449915-20450030,20450491-20450661,
20450761-20450807,20451090-20451182,20451571-20451709,
20452028-20452130,20452749-20452866
Length = 605
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -2
Query: 533 APASSTVRVRTCRFPHKAAKASAHVHMLSSVETQDETFFS 414
+PA++ V CR+P + + +AH + +S D+++ S
Sbjct: 155 SPAAAAAAVSHCRYPPRGVRGAAHPIVRASAYGLDDSYLS 194
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 249 LKYHRETDAITVVVMSQLPTLRPTMPRIDCCTYRCCKP 362
L+Y R A + Q+ T+R DCC Y C+P
Sbjct: 790 LRYRRRRRAYSCCHSDQMETMRRPCSH-DCCHYHSCRP 826
>02_05_0433 - 28939817-28940146
Length = 109
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 574 QQWREAADSLQRARIVLEQ 630
QQWR++ +L+R R++LEQ
Sbjct: 54 QQWRQSMQALERERLMLEQ 72
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 424 VSSCVSTEESMCTWADAFAAL*GKRQVRTRTVLEAGAYASWLRG 555
+ S ++TE+++ + + L KRQ T ++LEA WL G
Sbjct: 826 IPSLLTTEKTIVFFKQSTQVLPQKRQTSTYSILEAVICQDWLAG 869
>08_01_0212 -
1680199-1680240,1680661-1680723,1681620-1681729,
1681869-1682101,1683000-1683092,1683895-1683974,
1685148-1685156,1685243-1685245
Length = 210
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = -2
Query: 608 RCNESAASRHCCNSSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHVHMLSSVETQD 429
R N + ++ + + R+ + P +STV+ TCR+ + A ++ + +T D
Sbjct: 133 RLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHVRDARPQTVLVENPKTLD 192
Query: 428 E 426
+
Sbjct: 193 D 193
>01_06_1309 -
36170947-36171077,36171227-36172198,36172285-36172413,
36172535-36172779,36172904-36173055,36173202-36173306
Length = 577
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 246 VLKYHRETDAITVVVMSQLPTLRPTMPRID 335
+L+Y + T LP LRPT+P+I+
Sbjct: 309 ILEYEDPSSHSTAAFNKNLPVLRPTLPQIN 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,254
Number of Sequences: 37544
Number of extensions: 330420
Number of successful extensions: 1029
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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