Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1133
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_48144| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-19)            34   0.11 
SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      33   0.19 
SB_42448| Best HMM Match : Dynamin_N (HMM E-Value=2.5)                 31   1.0  
SB_20171| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       28   5.5  
SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27)                 28   5.5  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  28   7.3  
SB_9953| Best HMM Match : VWA (HMM E-Value=0)                          28   7.3  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3)                 27   9.7  
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +2

Query: 383 MQLRQEANTEPRKKFHLVSRLKKACAHGQMLLQL 484
           M+L+  ANTEPRK+FHL+ RL+KA  H Q L  L
Sbjct: 1   MELKLLANTEPRKRFHLIRRLQKASKHAQDLENL 34



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 29/41 (70%)
 Frame = +1

Query: 511 RTVLEAGAYASWLRGVLLLELQQWREAADSLQRARIVLEQL 633
           RT LEA AY+S+++G +  ELQ W+EA +   R+R + E+L
Sbjct: 43  RTKLEAQAYSSYMKGSVSFELQNWKEALELFGRSRTIYERL 83


>SB_48144| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-19)
          Length = 502

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 539 LLGCGACCCWSCNNGARQR 595
           L GC   CCW+C  GA QR
Sbjct: 317 LYGCKKACCWTCGGGANQR 335


>SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 684

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 272 RHYRRRDVTTTHLTANNAENRLLYIPLLQ--AERAWAHAMQ-LRQEANTEPRKKFHLVSR 442
           +H +   + T+H+ A NA  RLL IP L+  A R   H  + LR  +  +P         
Sbjct: 470 QHAKHTILNTSHINARNATRRLLIIPFLKSTAFRTRGHLNEHLRIHSGEKPFSCDQCGKA 529

Query: 443 LKKAC 457
            KKAC
Sbjct: 530 FKKAC 534


>SB_42448| Best HMM Match : Dynamin_N (HMM E-Value=2.5)
          Length = 412

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 569 SSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHVHMLSSV 441
           S+S TP  Q+    +SS   + T R P K  +   +VH LS +
Sbjct: 66  SASRTPERQDVQEKSSSKFDLATPRTPEKQDRTIGYVHELSDI 108


>SB_20171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 569 SSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHVHMLSSV 441
           S+S TP  Q+    ++  V + T R P K  +   +VH LS +
Sbjct: 70  SASRTPERQDVQEKSTINVDLATPRTPEKQDRTIRYVHELSDI 112


>SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 596 SAASRHCCNSSSNTPRSQEAYAPASSTVRVRTCRFPH---KAAKASAHVHMLSSVET 435
           +A SRHC N  + T  SQ  +   + T R R+ +  H   KA   S H H   + ET
Sbjct: 147 TARSRHCHNHGTVTITSQHCHDHGTVTARSRS-QHDHGTVKALSQSRHDHYTVNTET 202


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
 Frame = +2

Query: 254  IPQGDRRHYRRRDVTTTHLTA--NNAENRLL-----YIP-----LLQAERAWAHAMQLRQ 397
            IPQ D R  ++ D   TH  +  ++ E++L+     YI       + ++R WA     RQ
Sbjct: 1302 IPQSDLRWSQQTDAGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQ 1361

Query: 398  EANTEPRK 421
            EAN + R+
Sbjct: 1362 EANAQNRR 1369


>SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27)
          Length = 545

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 575 CNSSSNTPRSQEAYAPASSTVRVRTCRF---PHKAAK 474
           C+S +N P SQ A  PAS +V     R    PH A K
Sbjct: 491 CHSPANQPASQPASQPASQSVSQSASRATPRPHSAPK 527


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 54  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHG 179
           E ++EN +    E+ DK+ +K   L+  EI  +    QQ+ G
Sbjct: 812 EQQLENTRAKLRESYDKREDKMEDLMESEITELREKHQQELG 853


>SB_9953| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1034

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 291 MSQLPTLRPTMPRIDCCTYRC 353
           M+QLPTL   +    C TY+C
Sbjct: 63  MAQLPTLLTAISEASCATYKC 83


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 626  SSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHV 459
            SST      ESAA R  C   +  P +Q+ +A     V    C FP  ++   A +
Sbjct: 3457 SSTQHRMAIESAAIRFFCKCITMHPSNQQLFAQLLCNVMETPCCFPGDSSTTGAQL 3512


>SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3)
          Length = 353

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 632 SCSSTILARCNESAASRHCCNSSSN 558
           S + T  AR  ++ A+RH CN SSN
Sbjct: 58  SHTQTTSARLTQTKAARHDCNQSSN 82


>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +2

Query: 128 PQLRNISDNKRQSAAAWSPTC*LSEISWLLFAPHKKTAKSTQIPQGDRRHYRRRDVTTTH 307
           P LRN S++K+Q+A A SPT   S       +  +     T   Q +   Y  R + T+ 
Sbjct: 78  PTLRNKSNSKQQTARAKSPTSHRSRGVKSPVSNRRGNISRTMTSQSE--PYEGRKLPTSR 135

Query: 308 LTANN 322
           LT  N
Sbjct: 136 LTNRN 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,031,354
Number of Sequences: 59808
Number of extensions: 380579
Number of successful extensions: 1176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)