Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1133
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78198-7|CAB01573.1|  622|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O s...    30   1.6  
AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan sulph...    30   1.6  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical...    27   8.5  

>Z78198-7|CAB01573.1|  622|Caenorhabditis elegans Hypothetical
           protein F55C5.8 protein.
          Length = 622

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 19/40 (47%), Positives = 30/40 (75%)
 Frame = +1

Query: 514 TVLEAGAYASWLRGVLLLELQQWREAADSLQRARIVLEQL 633
           T LEA AYA+W+RG+   E + W++A++SL+ A+ V E+L
Sbjct: 152 TKLEAQAYAAWMRGMCSFESRNWQKASESLKLAKTVYEKL 191



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 105 KNEKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXXXXXXXKVLKY 257
           + E+ P    + I ++ +D+QQQHGLRH DY               K LK+
Sbjct: 10  ETEELPPFPTVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKF 60


>AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O
           sulfotransferase HST-6 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 484 KLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLH 383
           K Q H   C C  +S ++  LFSR+S  ++  LH
Sbjct: 108 KCQAHKKRCNCGRRSSNETWLFSRYSTGWVCGLH 141


>AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan
           sulphotransferase protein 6 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 484 KLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLH 383
           K Q H   C C  +S ++  LFSR+S  ++  LH
Sbjct: 108 KCQAHKKRCNCGRRSSNETWLFSRYSTGWVCGLH 141


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 54  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 185
           ES++EN +V   +     NEK+P++ +    +++R  + Q  +R
Sbjct: 549 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 592


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 54  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 185
           ES++EN +V   +     NEK+P++ +    +++R  + Q  +R
Sbjct: 554 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 597


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 54  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 185
           ES++EN +V   +     NEK+P++ +    +++R  + Q  +R
Sbjct: 549 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 592


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 54  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 185
           ES++EN +V   +     NEK+P++ +    +++R  + Q  +R
Sbjct: 554 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 597


>AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical
           protein Y38E10A.17 protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 39  NMVGQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHAD 194
           N++  + E  NGKV   E   KK +   +  + ++   T D ++  GLRH +
Sbjct: 63  NILCNKCERVNGKVKRCEAHKKKRKARKVRKDGDVADDTSDREKLGGLRHVN 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,789,788
Number of Sequences: 27780
Number of extensions: 271438
Number of successful extensions: 919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)