Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1133
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61970.1 68418.m07778 signal recognition particle-related / S... 44 1e-04
At1g80070.1 68414.m09373 splicing factor, putative strong simila... 30 1.1
At1g53165.1 68414.m06023 protein kinase, putative similar to ser... 29 2.0
At4g37990.1 68417.m05368 mannitol dehydrogenase, putative (ELI3-... 28 4.5
At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-... 28 4.5
At3g14120.2 68416.m01786 expressed protein similar to Nuclear po... 28 4.5
At3g14120.1 68416.m01785 expressed protein similar to Nuclear po... 28 4.5
At4g38780.1 68417.m05491 splicing factor, putative strong simila... 28 6.0
At1g11360.2 68414.m01305 universal stress protein (USP) family p... 27 7.9
At1g11360.1 68414.m01304 universal stress protein (USP) family p... 27 7.9
>At5g61970.1 68418.m07778 signal recognition particle-related /
SRP-related low similarity to Signal recognition
particle 68 kDa protein (SRP68) from Homo sapiens
SP|Q9UHB9, Canis familiaris SP|Q00004
Length = 605
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 230 KKTAKSTQIPQGDRRHYRRRDVTTTHLTANNAENRLLYIPLLQAERAWAHAMQLRQ-EAN 406
++ KS + G R Y RR + + +T + R L++ AERAW+HAM+ RQ
Sbjct: 62 RRLYKSLKFTHG-RGKYTRRAILESTVT----DVRFLHVVFYMAERAWSHAMEKRQLPDG 116
Query: 407 TEPRKKFHLVSRLKKA 454
R++ +LV RL+KA
Sbjct: 117 PNARQRIYLVGRLRKA 132
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 463 WADAFAAL*GKRQVRTRTVLEAGAYASWLRGVLLLEL-QQWREAADSLQRARIVLEQL 633
WA F++L + +RT LEA AYAS+++G LL E Q W + AR V E+L
Sbjct: 135 WASLFSSLCSIK-TDSRTSLEAEAYASYMKGTLLFEQDQNWETGLACFKNARAVYEEL 191
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +3
Query: 66 ENGKVTAVENSDKKNEKAPILL---NLEIFRITRDSQQQHGLRHADY 197
+ +++A+E D K+E + +L ++ + ++ + SQ QHGLRH DY
Sbjct: 4 KQSEISAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDY 50
>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2382
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Frame = +2
Query: 254 IPQGDRRHYRRRDVTTTHLTA--NNAENRLL-----YI-----PLLQAERAWAHAMQLRQ 397
IPQ D R+ ++ DV TH + ++ E++L+ YI + ++R WA RQ
Sbjct: 1382 IPQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQ 1441
Query: 398 EANTEPRK 421
EA + R+
Sbjct: 1442 EAQAQNRR 1449
>At1g53165.1 68414.m06023 protein kinase, putative similar to
serine/threonine protein kinase 24 [Homo sapiens]
SWISS-PROT:Q9Y6E0
Length = 1007
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 626 SSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAH 462
+STI R S + S S + RS ++ +P S T R TC + ++ H
Sbjct: 65 TSTITTRSVSRTTSENTFRSDSWSSRSSDSSSPTSYTPRTSTCNIFKITSSSTGH 119
>At4g37990.1 68417.m05368 mannitol dehydrogenase, putative (ELI3-2)
identical to GI:16269
Length = 359
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 75 KVTAVENSDKKNEKAPILLNLEIFRITRDSQQ 170
KVT + S+KK ++A L + F ++RD +Q
Sbjct: 205 KVTVISTSEKKRDEAINRLGADAFLVSRDPKQ 236
>At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-1)
identical to GI:16267
Length = 357
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 75 KVTAVENSDKKNEKAPILLNLEIFRITRDSQQ 170
KVT + S++K ++A L + F ++RD +Q
Sbjct: 205 KVTVISTSERKRDEAVTRLGADAFLVSRDPKQ 236
>At3g14120.2 68416.m01786 expressed protein similar to Nuclear pore
complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
norvegicus]
Length = 1077
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = +2
Query: 272 RHYRRRDVTTTH---LTANNAENRLLY 343
R YR+R T+ H L++N +ENRLLY
Sbjct: 24 RRYRKRHSTSPHEEMLSSNVSENRLLY 50
>At3g14120.1 68416.m01785 expressed protein similar to Nuclear pore
complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
norvegicus]
Length = 1101
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = +2
Query: 272 RHYRRRDVTTTH---LTANNAENRLLY 343
R YR+R T+ H L++N +ENRLLY
Sbjct: 24 RRYRKRHSTSPHEEMLSSNVSENRLLY 50
>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2332
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Frame = +2
Query: 254 IPQGDRRHYRRRDVTTTHLTA--NNAENRLL-----YIP-----LLQAERAWAHAMQLRQ 397
IPQ D R+ + DV +H + ++ E++L+ YI + ++R WA RQ
Sbjct: 1334 IPQSDLRYSNQTDVGVSHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQ 1393
Query: 398 EANTEPRK 421
EA + R+
Sbjct: 1394 EAQAQNRR 1401
>At1g11360.2 68414.m01305 universal stress protein (USP) family
protein contains Pfam PF00582: universal stress protein
family domain; similar to ethylene-responsive ER6
protein (GI:5669654) [Lycopersicon esculentum]
Length = 242
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 569 SSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHVHMLSSVETQDETFFSVQ 408
S +PRS +P TV+ + RFP A A + +V+ DE+ ++VQ
Sbjct: 3 SPGKSPRSDRK-SPTVVTVQPSSPRFPISTPTAGAQRKIGIAVDLSDESAYAVQ 55
>At1g11360.1 68414.m01304 universal stress protein (USP) family
protein contains Pfam PF00582: universal stress protein
family domain; similar to ethylene-responsive ER6
protein (GI:5669654) [Lycopersicon esculentum]
Length = 242
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 569 SSSNTPRSQEAYAPASSTVRVRTCRFPHKAAKASAHVHMLSSVETQDETFFSVQ 408
S +PRS +P TV+ + RFP A A + +V+ DE+ ++VQ
Sbjct: 3 SPGKSPRSDRK-SPTVVTVQPSSPRFPISTPTAGAQRKIGIAVDLSDESAYAVQ 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,432
Number of Sequences: 28952
Number of extensions: 244731
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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