Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1132
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.7  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   1.7  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   6.9  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   6.9  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   6.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   6.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.1  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.1  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   9.1  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.1  

>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 359 DVLYQLTTSYLHLSSNHPHFMFPAPQLCDKTRHLRRPDNRPQ*DD 493
           D+LY   +  +    N P ++ P     D+ RH+R+     + DD
Sbjct: 11  DLLYLSKSPLIKKPENLPEWILPEAMKADRERHIRQEKEMKRHDD 55


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 243 HQSFLSSSWKSLYNSLFKSDKWSSRLTKSIGQIRGRSKKTCSI 371
           H   LS    S  NS    ++W SRL K +    GR++   S+
Sbjct: 736 HPGSLSGISNSFVNSKHPIEQWQSRLRKILHLFSGRNEDIASL 778


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 357 KTCSISSRRLISTSAATIHILC 422
           K  +I SR L++ SAA +H++C
Sbjct: 92  KLFTIFSRSLVNRSAAVVHVIC 113


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = +3

Query: 177 NQVQCAALLRLQDSQTNVHRHPHQSFLSSSWKSLYNSLFKSDKWSSRLTKSIGQIRGRSK 356
           N V+    +R  D Q+NVH    +  +  +W S Y  L       S L    G+ + +  
Sbjct: 87  NNVEIKVFIRNNDKQSNVHNFKGKDSIHEAW-SQY--LIFDSMGLSPLIHISGEDKYKVL 143

Query: 357 KTCSISSRRLISTSAATIH 413
              SI  R+L   S  T+H
Sbjct: 144 CLFSIWRRKLGKCSIFTVH 162


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = -1

Query: 632 PISSLGTTFPPVTHIAVVYYIVTFIILIDEWIFRCSF*SIYIGELQRR 489
           P+S + T +PPV  I ++  I+ +I+  D+  ++ S  ++ I +L R+
Sbjct: 86  PVSQMATPYPPV-QIELMRKIIEWIMKCDD--YQYSLTTLQIQKLSRK 130


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 385  LSPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRR 495
            L PP+   S+  VP+P     N  P+P  + ++  +R
Sbjct: 1020 LLPPRSGSSSSGVPAPNLTPVNVPPTPPPRKSSASQR 1056


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +3

Query: 444 TKHVTFAVQTIGHSKTTLQLSYVYRSKGASKDPLINQDDESHDVVDYSYMSDRRKSSSEG 623
           + H +   ++   +K T + +         +  + N DD S D +DYS    R+  + EG
Sbjct: 35  SSHGSINSRSASPNKATSRRNRAQNGNSNGRASVDNSDDGSKDDLDYSPSVKRKHVNGEG 94

Query: 624 RNR 632
             +
Sbjct: 95  AEK 97


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 409  STFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPMYIDQ 522
            +T + P+PT     T  + S  S  V  +C S  Y  Q
Sbjct: 938  TTTFTPTPTTTTTPTPTTTSATSTNVIAQCGSAWYDSQ 975


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 135 DGAARDYDPARATVNQVQCAALLRLQDSQTNVHRHPHQSFLSSSW 269
           +G   D  P++ T+N+    +  R ++S  +VH    Q    +SW
Sbjct: 267 EGFENDLSPSQVTLNESSIISSNREEESFYSVHDSVTQKKTRTSW 311


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 438 CATKHVTFAVQTIGHSKTTLQLSYVYRSKGASKDPLINQDDESHDVVDYSYMSDRRKSSS 617
           C     T AV    H+   +  SY + S  +   P+++    +H V  YS +S    +++
Sbjct: 470 CGASRATAAV-VADHASGPVNGSYSHNSY-SHIPPVMSTSPPNHSVYPYSQLSINSVTAN 527

Query: 618 EGRN 629
            G+N
Sbjct: 528 HGQN 531


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 394 PQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPM-YIDQKE 528
           P   P+  + P P  VR + SPS      T     S+PM Y+ Q E
Sbjct: 734 PAPTPAVKHHPPPPPVRSSISPSMPPAPLT-HANSSTPMNYVSQPE 778


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 424 PSPTAVRQNTSPSPSRQSATVRRRCSSPM-YIDQKEHR 534
           P P++   NT  +PS  ++ VRR   SPM ++  + HR
Sbjct: 50  PEPSS---NTFYAPSSPASAVRREPLSPMSFVRMRSHR 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,630
Number of Sequences: 5004
Number of extensions: 43155
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)