Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1132
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1010 - 10215625-10216335,10216372-10216473 32 0.33
01_06_0181 - 27262425-27263337,27263452-27263633 32 0.44
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 31 1.0
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 30 1.8
04_03_0314 - 14238620-14240128 29 2.3
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 29 2.3
01_06_0570 - 30317848-30318240 29 2.3
06_01_0500 + 3584743-3585516 29 3.1
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 3.1
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545... 29 4.1
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 28 5.4
03_06_0122 - 31815023-31816357 28 5.4
03_05_0173 + 21502765-21504216 28 5.4
03_03_0193 - 15312568-15312753,15312811-15312933,15313112-153131... 28 5.4
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175... 28 5.4
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 28 7.1
10_03_0004 + 6891171-6891287,6891393-6891577,6891657-6891714,689... 27 9.4
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 27 9.4
04_03_1017 + 21747044-21748051 27 9.4
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759... 27 9.4
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 388 SPPQQQPSTFYVPS-PTAVRQNTSPSPSRQSATVRRRCSSPMY 513
+PP++ S Y PS PT R+ SP + + T RR +SP Y
Sbjct: 77 TPPRRAASPDYTPSTPTTPRRAASPDYTPSTPTPPRRAASPDY 119
>01_06_0181 - 27262425-27263337,27263452-27263633
Length = 364
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 370 SAHDVLSPPQQQPSTFYVPSPTAVRQNTSPSPS 468
S D+ SPP++Q VPS NTSPSP+
Sbjct: 187 STTDIASPPRRQRRHRVVPSSPPEEPNTSPSPA 219
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 388 SPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPMYIDQKEHRKIHSS 549
+PP PS + PSPT +T P PS + P ++ H + S
Sbjct: 122 APPPTAPSPYSAPSPTPTPTHTQPRPSPPLLPTPATAADPANPNKARHPSSNKS 175
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 388 SPPQQQ-PSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPM 510
SPP ++ S P +R+ T+PSP R T RR SP+
Sbjct: 271 SPPSRRVESPRCRPDSPPIRRRTAPSPIRHGGTPSRRPGSPI 312
>04_03_0314 - 14238620-14240128
Length = 502
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 394 PQQQPSTFYVPSPTAVRQNTSP--SPSRQSATVRRRCSSPMYI 516
P PST P+PTAVR +P +PS SA R P +
Sbjct: 27 PNPPPSTAAPPTPTAVRCTPAPAAAPSAASAASARSIPPPKLV 69
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 391 PPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPMYIDQKEHRKIHSSI 552
PP P P P AV++N P ++ S MY + +HRK HS +
Sbjct: 287 PPPSSPPPPMSPPPPAVKENLKHKPEPLKPSLSH---SSMY-NHNQHRKSHSRV 336
>01_06_0570 - 30317848-30318240
Length = 130
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 379 DVLSPPQQQPSTFYVPSPTAVRQNTSPSPSRQ-SATVRRRCSS 504
DVL P Q P V PTA T+P+P+R+ + R CS+
Sbjct: 12 DVLWPDHQSPHD--VVPPTATATATAPTPARRGQQQITRHCST 52
>06_01_0500 + 3584743-3585516
Length = 257
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 397 QQQPSTFYVPSPTAVR-QNTSPSPSRQSATVRRRCSSPMYIDQK 525
+++P + +P+P +R ++ P P R++ RRC P+ D +
Sbjct: 4 RKKPGSKKMPTPAVMRIRSPPPDPHRRARAAPRRCIPPLASDSE 47
>02_05_1052 + 33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 388 SPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPM 510
+PP++ T PSPT +S +P R + R R S+P+
Sbjct: 1103 APPKRLARTLSSPSPTKASSISSFTPRRMPSPSRNRPSTPV 1143
>03_02_0076 -
5451137-5452503,5453439-5453866,5453949-5454046,
5454723-5454836,5455017-5455111,5455222-5455283,
5455398-5455557,5456247-5456643
Length = 906
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +1
Query: 394 PQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSP 507
PQ QP YVP P A + PSP T R +SP
Sbjct: 37 PQPQPQQRYVPKPAAPK----PSPPPTLTTALRSSASP 70
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = +3
Query: 384 LISTSAATIHILCSQ-----PHSCATKHVTFAVQTIGHSKTTLQLSYVYRSKGASKDPLI 548
L S AT +LCS P K F+ + H L S+ KGA DP +
Sbjct: 189 LASPGTATTSVLCSAATIMWPWEALVKGEDFSPKRFNHPPDGLAGSWYGHYKGALDDPFV 248
Query: 549 NQDDESHDVV 578
+ + E VV
Sbjct: 249 DTEPEELVVV 258
>03_06_0122 - 31815023-31816357
Length = 444
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 HQSFLSSSWKSLYNSLFKSDKWSSR--LTKSIGQIRGRSKKTCSISSRRLISTSAATIHI 416
H S W + SL S SSR T + GR TC +SS RLI + + +
Sbjct: 75 HLSKADLEWFARKPSLLFSSSSSSRGPATLKVAVYAGRKGTTCGVSSGRLIGKATIPVDL 134
>03_05_0173 + 21502765-21504216
Length = 483
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 388 SPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSP 507
SPPQQ+ F PSPT +SP P Q+ ++P
Sbjct: 64 SPPQQRVGVF--PSPTPQIVGSSPPPPSQARVGEANVTNP 101
>03_03_0193 -
15312568-15312753,15312811-15312933,15313112-15313134,
15313196-15313349,15314443-15314754
Length = 265
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 270 STMTKESFDGGAGEHWFGCLGGEGEQRTGLG 178
S+ + F GG G H+FG GG G G G
Sbjct: 37 SSSSSSPFSGGGGGHFFGGGGGRGRGGGGGG 67
>01_01_0201 +
1746088-1747086,1748735-1748806,1750106-1750168,
1750355-1750489,1750604-1750669
Length = 444
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 415 FYVPSPTAVRQNTSPSPSRQSATVRRRCSSPMYID 519
F PSP++V + T P+P +S + + ++P+ ++
Sbjct: 198 FAHPSPSSVLEATKPAPKPESPPLPEQAATPLLVE 232
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 165 RATVNQVQCAALLRLQDSQTNVHRHPHQSFLS 260
R T+ + A +LR D +T+ HRH FLS
Sbjct: 388 RRTIRGARKAKMLRRHDRRTHNHRHEVADFLS 419
>10_03_0004 +
6891171-6891287,6891393-6891577,6891657-6891714,
6893517-6893834
Length = 225
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 460 SPSRQSATVRRRCSSPMYIDQKEHRK 537
+PSR ++ R RCSSP+++ K HR+
Sbjct: 138 TPSRGASLTRSRCSSPVHLLHK-HRE 162
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 385 LSPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVR 489
++PP + T SPT VR++TS SP + + R
Sbjct: 14 ITPPADRNGTSKSKSPTPVRRSTSRSPPPKKSDSR 48
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 388 SPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPMYIDQKEHRKIHS 546
SPP++ S Y P+ + R S + RRR +SP Y R+ S
Sbjct: 152 SPPRRAASPDYTPASPSRRAAASSPDYTPESPPRRRAASPDYSPSTPPRRAAS 204
>01_07_0189 +
41875088-41875149,41875322-41875392,41875809-41875902,
41876285-41876360,41877130-41877293,41877428-41877605,
41877687-41877809,41877895-41877990,41878091-41878372
Length = 381
Score = 27.5 bits (58), Expect = 9.4
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Frame = +3
Query: 309 SSRLTKSIGQIRGRSKKTCSISSRRLIS-TSAATIHILCSQPHSCATKHVTFAVQTIGHS 485
+ RL + Q + C + +S T I I CS H H++ V
Sbjct: 50 AERLEHLLNQPANKICADCGAPDPKWVSLTFGVFICIKCSGAHRSLGVHISKVVSVKLDE 109
Query: 486 KTTLQLSYVYRSKGASKDPLINQDDESHDVVDYSYMSDRRKSSSEGRN 629
T Q+ + S G + +N E+ + +YM R+ SSEGRN
Sbjct: 110 WTDEQVDILADSGG---NAAVNMIYEAF--IPENYMKPRQDCSSEGRN 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,623
Number of Sequences: 37544
Number of extensions: 323948
Number of successful extensions: 1354
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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