Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1132
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19695| Best HMM Match : ATP-synt_DE_N (HMM E-Value=3.8)             31   1.0  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      31   1.0  
SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)             30   1.4  
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   29   2.4  
SB_54441| Best HMM Match : FKBP_C (HMM E-Value=1.7)                    29   3.2  
SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)                 29   3.2  
SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               28   7.3  
SB_360| Best HMM Match : 7tm_1 (HMM E-Value=0.015)                     28   7.3  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   27   9.7  
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       27   9.7  
SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)                    27   9.7  

>SB_19695| Best HMM Match : ATP-synt_DE_N (HMM E-Value=3.8)
          Length = 307

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +3

Query: 291 FKSDKWSSRLTKSIGQIRGRSKKTCSISSRRLISTSAATIHILCSQPHSCATKHVTFAVQ 470
           F  +  S R    + Q       TC + +R     +A   H+ CS       +HVT A  
Sbjct: 93  FLREARSVRHKVRVHQSTNHVNDTCELLTRL---KTAQMFHVECSSTEE--EEHVTSAAD 147

Query: 471 -TIGHSKTTLQLSYVYRSKGASKDPLINQDDE 563
            T GH  T   +++ + + G S++ ++N DD+
Sbjct: 148 DTFGHMDTITLMNF-HNAIGLSQNGILNDDDK 178


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 321 TKSIGQIRGRSKKTCSISSRRLISTSAATIHILCSQPHSCATK 449
           T SI     R  KT + +S RLI T   +IHI    PH C  K
Sbjct: 151 TNSISSDSRRITKTTNSNSTRLIRTPGQSIHIKVKAPH-CENK 192


>SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 12/148 (8%)
 Frame = +3

Query: 120  DG-ANFDGAARDYDPARATVNQVQCAALLRLQDSQTN-VHRHPHQSFLSSSWKSLY---- 281
            DG A F    RDY     T N  +C A    Q S+T  +        +SS+ K L     
Sbjct: 911  DGSAVFFDRYRDYSTKSVTRNARECEASRVYQLSETTPLPSQKAVLTVSSNKKQLMSIIC 970

Query: 282  NSLFKSDKWSSRLT-KSIGQIRGRSKKT-----CSISSRRLISTSAATIHILCSQPHSCA 443
            N++ K D + ++ T K+   I G S  T       IS   L +T     +I+  Q   CA
Sbjct: 971  NNITKDDSFHTQYTSKNKLVITGDSVPTEIYNGLVISRNDLATTHEKADNIVAQQAIMCA 1030

Query: 444  TKHVTFAVQTIGHSKTTLQLSYVYRSKG 527
             +H+   V     +   + L+Y Y  +G
Sbjct: 1031 REHIGTTVVVADDTDVFVLLAYHYLHEG 1058


>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
          Length = 479

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +1

Query: 388 SPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPM 510
           +PP  QPS     +PT V  +TSP+P+ Q+  +R R  +PM
Sbjct: 101 TPPLSQPSPASSATPTRVPDSTSPTPA-QADGLRHR-GTPM 139


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +1

Query: 388 SPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPMYIDQKEHRKIHSSI 552
           S P  +  +  +P PT  +  T PS + Q A      ++  Y+    HR    S+
Sbjct: 188 SGPVAETHSCIIPCPTTQKTTTKPSTTSQDAPTNLTATAVFYLPYAVHRLKRKSV 242


>SB_54441| Best HMM Match : FKBP_C (HMM E-Value=1.7)
          Length = 145

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 QVQCAALLRLQDSQTNVHRHPHQSFLSSSWKS 275
           ++ C  LLRL D  T+V  H H S    S+KS
Sbjct: 60  RLTCHLLLRLLDESTDVMSHDHSSASKYSFKS 91


>SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 QVQCAALLRLQDSQTNVHRHPHQSFLSSSWKS 275
           ++ C  LLRL D  T+V  H H S    S+KS
Sbjct: 17  RLTCHLLLRLLDESTDVMSHDHSSASKYSFKS 48


>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
          Length = 1427

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 376 HDVLSPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVR 489
           H   +PP+ +P+    P+PT V + T P P R S  V+
Sbjct: 505 HAGAAPPRSRPTDHAAPAPTVV-EPTGPPPIRISVEVQ 541


>SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 385 LSPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPMY 513
           L P QQ P + +V           P PS ++AT +RR S   Y
Sbjct: 23  LQPVQQSPKSRWVNVSLQREMAGLPGPSMKNATAKRRTSYSFY 65


>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 391 PPQQQPSTFYVPSPTAVRQNTSPSPSRQSATV 486
           PP  QP    +P PT     T P+P R   T+
Sbjct: 433 PPLPQPPPSIIPPPTTPLPQTVPTPPRPPTTM 464


>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 159 PARATVNQVQCAALLRLQDSQTNVHRHPHQSFLSSSWKSLYNSLFKSDKW 308
           PA   V   +CA  LR  D++ +V     +   S SW SLY+     +KW
Sbjct: 171 PATPAVRPAKCAVTLR--DTRDSVIGGFGRWLTSYSWMSLYSMSSCKEKW 218


>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1706

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +1

Query: 400  QQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPMYI 516
            Q P+TF VP   A++Q  SPSP+  +ATV +   +  YI
Sbjct: 1009 QGPATF-VPVTQAIQQ-LSPSPTHGTATVSQASVAIQYI 1045


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 388 SPPQQQPSTFYVPSPTAVRQNTSP-SPSRQSATVRRRCSSPMY 513
           SP    P++ Y+PSP A     SP SP+   ++     +SP Y
Sbjct: 391 SPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPASPSY 433


>SB_360| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
          Length = 251

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
 Frame = +3

Query: 336 QIRGRSKK-TCSISSRRLISTSAATIHILCSQPHSCATKHVT--------FAVQTIGHSK 488
           QI   SK  TCSI  R L S+    IHI      S A KHV         +A  +  H+ 
Sbjct: 11  QILSSSKGVTCSIPRRSLQSSYHGNIHI--RHQTSPAAKHVLSNESCCRGYACGSPSHAP 68

Query: 489 TTLQLSYVYRSKGASKDPLINQDDESHDVVDYSYMSDRRKSS 614
             L L     S G +     N D  SH    Y    D  K S
Sbjct: 69  RRLYLRIDVASLGKTGKSHSNMDHVSHSTGVYIAYGDNSKVS 110


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 400 QQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPM 510
           Q  ST   P PT  + +T P P+    T   R  SPM
Sbjct: 276 QTKSTSPSPQPTEAKPHTPPPPTSTPPTTAPRQPSPM 312


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 373  AHDVLSPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRC 498
            AH +  PP   P +  V     +R++    PS   AT RR C
Sbjct: 1185 AHMLAQPPNNIPVSSPVGDGNLLREDICRYPSDSVATARRNC 1226


>SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)
          Length = 884

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 372 SSRRLISTSAATIHILCSQPHSCATKHVTFAVQTIGHSKTTLQLSYVY-RSKGASKDPLI 548
           S   L ST A  IH+   QP  C T     A Q+ G     L L++V  ++KG+  +   
Sbjct: 680 SDENLASTGAEHIHVGREQPAICGTAPTNGAQQSQG----ILDLNHVIKKAKGSEGEEQG 735

Query: 549 NQDDESHDVVDYSYMS 596
           ++ D + +  D++  S
Sbjct: 736 DEGDGAPEDEDHNNQS 751


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,536,263
Number of Sequences: 59808
Number of extensions: 332244
Number of successful extensions: 1508
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)