Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1132
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13370.1 68417.m02090 expressed protein                             30   1.1  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    29   2.6  
At3g59400.1 68416.m06625 expressed protein                             29   2.6  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    28   4.5  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    28   6.0  
At1g65270.3 68414.m07401 expressed protein                             28   6.0  
At1g65270.2 68414.m07400 expressed protein                             28   6.0  
At1g65270.1 68414.m07399 expressed protein                             28   6.0  
At5g49440.1 68418.m06117 expressed protein                             27   7.9  
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot...    27   7.9  
At2g31340.1 68415.m03825 expressed protein                             27   7.9  
At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10) s...    27   7.9  

>At4g13370.1 68417.m02090 expressed protein
          Length = 673

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 406 PSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSS 504
           PS +  PSP   + N SPS  R S +  RR SS
Sbjct: 267 PSRYRQPSPNGRKMNPSPSGRRMSISPGRRLSS 299


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 391 PPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSPMY 513
           PP Q P   Y P P   + N+ P  S   A V ++ + P +
Sbjct: 629 PPSQSPPVVYSPPPRPPKINSPPVQSPPPAPVEKKETPPAH 669


>At3g59400.1 68416.m06625 expressed protein
          Length = 265

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 393 TSAATIHILCSQPHSCATKHVTFAVQTIGHSKTTLQLSYVYRSKGASKDPLINQDDESHD 572
           TSAAT  ++CS   + ++     AV T   S TT + + ++      ++ L+NQ+    D
Sbjct: 41  TSAATFSLICSASSTSSSTTAVSAVSTTNASATTAETATIF---DVLENHLVNQNFRQAD 97


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 391 PPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRRRCSSP 507
           PP   PS+  +PSP+A      P PS  S   +R+   P
Sbjct: 602 PPPPPPSSRSIPSPSAPPPPPPPPPSFGSTGNKRQAQPP 640


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 385 LSPPQQQPSTFYVPSPTAVRQNTSP 459
           + PP  QP T+  P+PT     TSP
Sbjct: 114 VKPPSVQPPTYKPPTPTVKPPTTSP 138


>At1g65270.3 68414.m07401 expressed protein
          Length = 292

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 448 NTSPSPSRQSATVRRRCSSPMYIDQK 525
           ++SP   +Q+ T+RRR S P  +D K
Sbjct: 50  SSSPQQQQQTPTIRRRYSDPTDLDSK 75


>At1g65270.2 68414.m07400 expressed protein
          Length = 292

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 448 NTSPSPSRQSATVRRRCSSPMYIDQK 525
           ++SP   +Q+ T+RRR S P  +D K
Sbjct: 50  SSSPQQQQQTPTIRRRYSDPTDLDSK 75


>At1g65270.1 68414.m07399 expressed protein
          Length = 292

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 448 NTSPSPSRQSATVRRRCSSPMYIDQK 525
           ++SP   +Q+ T+RRR S P  +D K
Sbjct: 50  SSSPQQQQQTPTIRRRYSDPTDLDSK 75


>At5g49440.1 68418.m06117 expressed protein
          Length = 181

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 391 PPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVR-RRCS 501
           PPQ++P     PSP   ++       R+SAT +  RC+
Sbjct: 43  PPQEKPVGSITPSPELEKKQVERPEKRRSATPKTHRCA 80


>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
           (ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
           protein) {Arabidopsis thaliana}; contains Pfam profiles
           PF02171: Piwi domain, PF02170: PAZ domain
          Length = 988

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 385 LSPPQQQPSTFYVPSPTAVRQNTSPSPSRQSATVRR 492
           + PP   P T   P+     Q +SPSP  ++ + RR
Sbjct: 34  IPPPSPSPVTVTTPATVTQSQASSPSPPSKNRSRRR 69


>At2g31340.1 68415.m03825 expressed protein
          Length = 559

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +3

Query: 192 AALLRLQDSQTNVHRHPHQSFLSSSWKSLYNSLFKSDKWSSRLTKSIGQIRGRSKKTCSI 371
           A  +    S T  H   HQS+  +SW S+   L  + K  ++L   +  +  ++ K  SI
Sbjct: 60  AGYVDFAQSITEHHPDHHQSYPWTSWTSVDPPLLSNCK--TQLENCLESMSHKAIKLGSI 117

Query: 372 SSRRLIST 395
           SS+++ +T
Sbjct: 118 SSQQIFTT 125


>At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10)
           similar to 14-3-3 protein GF14 epsilon GI:5802798 from
           [Arabidopsis thaliana]
          Length = 196

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 237 HPHQSFLSSSWKSLYNSLFKSDKWSSRLTKSI-GQIRGRSKKTCSISSRRLISTSAATIH 413
           H H + LSSS    YN  F+  K + + +  +  ++  + +   S+  + +IS   A++ 
Sbjct: 8   HVHFASLSSS-SERYNETFEEIKKAMKKSVQLKAELSAKERNLVSVGYKNVISARRASLE 66

Query: 414 ILCS 425
           IL S
Sbjct: 67  ILSS 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334,193
Number of Sequences: 28952
Number of extensions: 239972
Number of successful extensions: 899
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)