Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1130
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   3.2  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    27   3.2  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   4.2  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   5.5  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   5.5  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.5  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   9.7  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 409 PPFASWRNSEEARTDRPSQQLRSLN 483
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +2

Query: 185 DSLFYWACTAL 217
           D+LF+WACTAL
Sbjct: 34  DNLFHWACTAL 44


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 278 HAVPGPADWWTPSPTCSATKSVQCKPSRTGNLHKQI 171
           H VPG  D W+ SP        + +     NLH Q+
Sbjct: 68  HDVPGNQDEWSSSPIAGIIVESEDEEVVENNLHSQM 103


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/71 (22%), Positives = 35/71 (49%)
 Frame = +1

Query: 355 RRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVIFC*NSR*I 534
           +RD+E  G ++    ++  PF +  +  +A    P   L++   ++   SV+    +  +
Sbjct: 30  QRDYETFGDSKHTSFSSFAPFENEVSLNQAVIPSPPSHLQNFQDQFDYSSVLKTPFNPLL 89

Query: 535 FVKSAHFLTNR 567
              SA+FL+N+
Sbjct: 90  EANSAYFLSNQ 100


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 534 NLTRILTKYNAYNLPFAIQAAQLLGRAIGAGLFAIT 427
           ++ ++  KY++ N+PF + AAQ+   +  A + A T
Sbjct: 217 HILKLTEKYSSQNVPFDVYAAQIPHHSNLASVLATT 252


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 133 IKYVQIIRTLLIYICLWRFPVLLGLHCTDFVAE 231
           I+Y+     L I  CL  FP+LL ++ T+ V E
Sbjct: 90  IRYLFTFGALCILGCLVLFPILLPVNATNGVGE 122


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 346 RRPVNCNTTHYRANWVPGPPSRRTRCPDPPTGGRRHQRARQQNQCSASPVEQGISTSK 173
           RRPV     H R NW P     R R  +    GRR ++ R+      SP  +G+   +
Sbjct: 79  RRPVE----HER-NWQPELKHGRERFRERDYEGRRDRKERRDGVSPFSPEGEGLERKR 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,896
Number of Sequences: 5004
Number of extensions: 53869
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)