Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1130
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410...    31   0.61 
01_06_0317 + 28425408-28426079,28426286-28426351                       31   0.81 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.4  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   2.5  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   2.5  
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229     29   3.3  
03_05_0267 - 22538631-22539452                                         29   3.3  
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127...    28   5.7  
06_01_0092 - 775290-775691                                             28   7.6  

>07_01_0551 -
           4105721-4105774,4106090-4106159,4106880-4106945,
           4106985-4107479,4107491-4107672,4107728-4108222
          Length = 453

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 292 PPSRRTRCPDPPTGGRRHQRARQQNQCSASPV-EQGIST 179
           PP R  R P PP G R H+R+  +  C+A  V ++GI T
Sbjct: 144 PPPRFPRPPAPPPGLRPHRRSDIRKICAAVDVADEGIVT 182


>01_06_0317 + 28425408-28426079,28426286-28426351
          Length = 245

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -2

Query: 325 TTHYRANWVPGPPSRRTRCPDPPT------GGRRHQRARQQNQCSASPVEQGIST 179
           T H+   WVP P  R  R P  P       GG R  R R+++  S+S    G +T
Sbjct: 13  TAHHLKPWVPTPTPRSHRVPSLPAVSGGGGGGARPARDRRRSSSSSSHRRGGTTT 67


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 326 ITIHWPSFYNVV-TGKTLALPNLIALQH 406
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 388 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 486
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 388 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 486
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
          Length = 212

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 298 PGPPSRRTRCPDPPTGGRRHQRARQQNQCSASP 200
           PG P RR   P P  GGR  Q A    +C   P
Sbjct: 164 PGSPGRRLAQPPPRPGGRLAQAAASPFRCLYRP 196


>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -1

Query: 311 GELGTGPPLEAHAVPGPADWWTPSPTCSATKSVQCKPSRT 192
           GELG GP +   A P     W P    S   S    P+RT
Sbjct: 160 GELGGGPTVRRRASPPARPRWWPCSPSSPPASPSPSPART 199


>03_05_0559 -
           25610474-25610951,25611149-25611890,25612355-25612744,
           25613041-25613099,25613186-25613326,25613449-25613545,
           25614999-25615185
          Length = 697

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 286 SRRTRCPDP-PTGGRRHQRARQQ 221
           S+R R   P PTGG RH RAR +
Sbjct: 624 SKRMRASSPSPTGGDRHSRARSR 646


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 446 RASSLLRQLAKGGCAARR 393
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,803,101
Number of Sequences: 37544
Number of extensions: 410648
Number of successful extensions: 1326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)