Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1130
         (659 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2194|AAN11859.1| 1257|Drosophila melanogaster CG11006-P...    29   4.2  
AE014296-2193|AAN11858.1| 1294|Drosophila melanogaster CG11006-P...    29   4.2  
AE014296-2192|AAN11860.2| 1272|Drosophila melanogaster CG11006-P...    29   4.2  
U89385-1|AAB49892.1|  534|Drosophila melanogaster LIM homeobox p...    29   7.4  
AF145674-1|AAD38649.1|  465|Drosophila melanogaster tailup protein.    29   7.4  
AE014134-2994|AAN11018.1|  465|Drosophila melanogaster CG10619-P...    29   7.4  
AE014134-2993|AAF53720.1|  534|Drosophila melanogaster CG10619-P...    29   7.4  

>AE014296-2194|AAN11859.1| 1257|Drosophila melanogaster CG11006-PB,
           isoform B protein.
          Length = 1257

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 362 TGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 475
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 26  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 63


>AE014296-2193|AAN11858.1| 1294|Drosophila melanogaster CG11006-PC,
           isoform C protein.
          Length = 1294

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 362 TGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 475
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 63  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 100


>AE014296-2192|AAN11860.2| 1272|Drosophila melanogaster CG11006-PD,
           isoform D protein.
          Length = 1272

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 362 TGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 475
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 41  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 78


>U89385-1|AAB49892.1|  534|Drosophila melanogaster LIM homeobox
           protein protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 319 HYRANWVPGPPSRRTRCPDPPTGGRRHQRARQQNQCSASPVEQGIST 179
           H  ++   GPP +    P PP G   HQ  +   Q   S ++ GI++
Sbjct: 398 HPHSHPAQGPPHQH---PPPPGGPHNHQNQQPNQQPGGSSLDSGITS 441


>AF145674-1|AAD38649.1|  465|Drosophila melanogaster tailup protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 319 HYRANWVPGPPSRRTRCPDPPTGGRRHQRARQQNQCSASPVEQGIST 179
           H  ++   GPP +    P PP G   HQ  +   Q   S ++ GI++
Sbjct: 398 HPHSHPAQGPPHQH---PPPPGGPHNHQNQQPNQQPGGSSLDSGITS 441


>AE014134-2994|AAN11018.1|  465|Drosophila melanogaster CG10619-PB,
           isoform B protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 319 HYRANWVPGPPSRRTRCPDPPTGGRRHQRARQQNQCSASPVEQGIST 179
           H  ++   GPP +    P PP G   HQ  +   Q   S ++ GI++
Sbjct: 398 HPHSHPAQGPPHQH---PPPPGGPHNHQNQQPNQQPGGSSLDSGITS 441


>AE014134-2993|AAF53720.1|  534|Drosophila melanogaster CG10619-PA,
           isoform A protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 319 HYRANWVPGPPSRRTRCPDPPTGGRRHQRARQQNQCSASPVEQGIST 179
           H  ++   GPP +    P PP G   HQ  +   Q   S ++ GI++
Sbjct: 398 HPHSHPAQGPPHQH---PPPPGGPHNHQNQQPNQQPGGSSLDSGITS 441


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,360,865
Number of Sequences: 53049
Number of extensions: 668637
Number of successful extensions: 2051
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2043
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)