Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1130
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    30   1.7  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : short...    28   6.8  

>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 298 PGPPSRRTRCPDPPTGGRRHQR-ARQQNQCS--ASPVEQGISTSKYKLI 161
           P PP RR   P PP   RR +  +RQ+ + S   SP  +  S +K  +I
Sbjct: 89  PSPPRRRRPSPSPPRRDRRDRSGSRQRRRASPRRSPAARSASPAKRVVI 137


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 495 LPFAIQAAQLLGRAIGAGLFAITPAGE--RGMCCKAIKLGNARV 370
           L F+  +  L G++IGA L   T AGE   G   K +K G++RV
Sbjct: 761 LDFSSDSQYLRGQSIGAHLLFWTKAGEICDGTSVKDVKWGSSRV 804


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 295 GPPSRRTRCPDPPTGGRRHQRAR 227
           GPPS R R P+PPT  R  Q  R
Sbjct: 120 GPPSSRPRKPEPPTMPRTIQGFR 142


>AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 9 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -2

Query: 373 GFPSHDVVKRRPVNCNTTHYRANWVPGPPSRRTRCPDPP 257
           G P     K  P N  T H+  N  P P     + P PP
Sbjct: 254 GLPGPQGPKGEPGNPGTCHHCQNRAPAPSEAPGKAPPPP 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,918
Number of Sequences: 27780
Number of extensions: 336750
Number of successful extensions: 827
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)