Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1130
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    31   0.51 
At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3...    29   3.6  
At1g27020.1 68414.m03294 expressed protein                             27   8.4  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 298 PGPPSRRTRCPDPPTGGRRHQRARQQNQCSASPV 197
           P PP+RR R P PP   RR      +   S SP+
Sbjct: 372 PSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPL 405



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 298 PGPPSRRTRCPDPPTGGRRHQRARQQNQCSASP 200
           P PP+RR R P PP   RR      +   S +P
Sbjct: 313 PSPPARRRRSPSPPARRRRSPSPPARRHRSPTP 345



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 298 PGPPSRRTRCPDPPTGGRRHQRARQQNQCSASP 200
           P PP+RR R P PP    R      + + S SP
Sbjct: 323 PSPPARRRRSPSPPARRHRSPTPPARQRRSPSP 355



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 298 PGPPSRRTRCPDPPTGGRRHQRARQQNQCSASPVEQGISTS 176
           P PP+RR R P PP   RR      +   S  P  +  S S
Sbjct: 333 PSPPARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRSPS 373



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 292 PPSRRTRCPDPPTGGRRHQRARQQNQCSASPV 197
           PP+RR R P PP   RR      + + S SP+
Sbjct: 364 PPARRRRSPSPPARRRRSPSPPARRRRSPSPL 395



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 379 RQGFPSHDVVKRRPVNCNTTHYRANWVPGPPSRRTRCPDPPTGGRRHQ 236
           R+  PS    +RR  +     +R+   P PP+R+ R P PP   RRH+
Sbjct: 319 RRRSPSPPARRRRSPSPPARRHRS---PTPPARQRRSPSPP--ARRHR 361


>At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3)
           identical to transcription factor 3 (TCP3) [Arabidopsis
           thaliana] (GI:3243274); similar to flower development
           protein cycloidea (cyc3) GI:6358611 from [Misopates
           orontium]
          Length = 391

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 232 HVGDGVHQSAGPGTACASRG 291
           H+  G+HQSA PG A AS G
Sbjct: 339 HIPPGIHQSAIPGIAFASSG 358


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 364 WENPGVTQLNRLAAHPPFASW 426
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,944,664
Number of Sequences: 28952
Number of extensions: 302108
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)