Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1129
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.6  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    26   3.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   4.8  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    25   4.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.3  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 162  KFEISTIIYNLNVKKTFTLQGKKVRNH 242
            KFEI  ++ NLNVK       +  RNH
Sbjct: 1050 KFEIELLLNNLNVKMDNIEPSEMYRNH 1076


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 358 LSQARQAITSGSSSEKPWIGGTSSS 432
           LSQ  + IT  +SS+ P++GG  S+
Sbjct: 315 LSQRTRRITKQTSSKTPFLGGVGSA 339


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 440  DQDDDDVPPIQGFSDDEPLVIA*RACDRTSVI 345
            +Q DDDV P+   S  E L+I+    D TSV+
Sbjct: 1439 EQIDDDVSPVAQDSSLEELLISLDIIDLTSVM 1470


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 455 HATITDQDDDDVPPIQGFSDDEPL 384
           H  I  +    +PPI GF+D +P+
Sbjct: 161 HTNIHPEAPTVLPPIDGFTDSQPI 184


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 24   NNLNEIFISIFLHYLSFTNV*LCLFVLIT 110
            + LN    S  +H  SF+N+ LCL +  T
Sbjct: 1140 STLNSFLESAIVHVTSFSNLRLCLTLAFT 1168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,147
Number of Sequences: 5004
Number of extensions: 33604
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)