Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1129
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0365 - 22742886-22744223                                         27   6.3  
11_06_0362 - 22723104-22724441                                         27   6.3  
07_03_1673 - 28532923-28533009,28533058-28533117,28533664-285337...    27   6.3  
12_02_1259 - 27382639-27384284,27386570-27386612                       27   8.4  
12_02_0885 + 23994354-23994584,23994987-23995342,23995549-239956...    27   8.4  
02_02_0493 + 10921284-10922558                                         27   8.4  

>11_06_0365 - 22742886-22744223
          Length = 445

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 440 DQDDDDVPPIQGFSDD 393
           D DDDD+ PI G +DD
Sbjct: 316 DDDDDDLDPIVGINDD 331


>11_06_0362 - 22723104-22724441
          Length = 445

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 440 DQDDDDVPPIQGFSDD 393
           D DDDD+ PI G +DD
Sbjct: 316 DDDDDDLDPIVGINDD 331


>07_03_1673 -
           28532923-28533009,28533058-28533117,28533664-28533732,
           28534757-28534862,28535058-28535203,28535805-28536017,
           28536523-28536546,28536647-28536704,28536739-28537022,
           28538890-28539063,28539427-28539825
          Length = 539

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 55  FSIIYLL-QMCNCACSF*LQNIFNTNY*PRI*SAISISLKFQQLF 186
           FS++Y+L Q+  CAC+F +  +    Y PR      I  K ++ F
Sbjct: 351 FSLLYVLFQVVTCACAFGIWFLDGGTYMPRHLHKEDICFKMEKAF 395


>12_02_1259 - 27382639-27384284,27386570-27386612
          Length = 562

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 352 LVLSQARQAITSGSSSEKPWIGGTSSSSWSVMV 450
           L LS A  A+       +   GG SSSSW+ MV
Sbjct: 404 LALSVATMAVAVAVEQRRRGAGGGSSSSWAWMV 436


>12_02_0885 +
           23994354-23994584,23994987-23995342,23995549-23995663,
           23995918-23995962,23996151-23996333,23996802-23996978,
           23997345-23997476,23997587-23997766,23999116-23999247,
           24000212-24000280,24000377-24000490,24000579-24000806,
           24001343-24001486
          Length = 701

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 488 PHTPRYDSRRGHATITDQDDDDVPPIQGFSDDE 390
           PH  +   +  H  + D DDDD     G+  +E
Sbjct: 47  PHPHQQQQQLRHQVVDDDDDDDAHARSGYHSEE 79


>02_02_0493 + 10921284-10922558
          Length = 424

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -2

Query: 494 HSPHTPRYDSRRGHATI----TDQDDDDVPPIQGFSDD 393
           ++ H P     RG   I    T  DDDDV P  GF D+
Sbjct: 152 YAVHRPLQHPERGLLAIPFSSTHDDDDDVEPDLGFDDE 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,924,426
Number of Sequences: 37544
Number of extensions: 179101
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)